| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2876 |
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| Symbol | ligA |
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| ID | 7385986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2393822 |
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| End bp | 2395981 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651895 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002550080 |
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| Protein GI | 222149123 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0956415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGATG CATTGATCCC GGTCGAAGAC CTCAGCGAAG AGCAGGCCGG GCAGGAACTC
ATCCGGTTGG CCGCCGCCAT TGCCCATCAT GATGCGCTTT ACCATGGCAA GGACCAGCCG
GAAATTTCCG ATGCTGATTA TGATGCGTTG AAGCGGCGCA ACGATGCCAT CGAGGCGCGG
TTTCCGACTT TGGTGCGCAG CGATAGTCCG TCGCAGCGGG TGGGTGCGGC ACCTGCCGGG
ATTTTCTCGC AGATCACCCA TGCAAGGCCG ATGCTGTCGC TGGACAACAC GTTTTCCGAT
GAGGACGTGG CGGATTTCGT GGCCTCGGTC TATCGCTTTT TAGGCGTGAT GCCGGACAAT
TCCATCGCCT TTACCGCCGA ACCGAAGATC GATGGCCTGT CGATGTCGAT CCGCTATGAG
CACCGCAAAC TCAAGACGGC AGCGACGCGC GGTGATGGCA CGACGGGCGA AAACGTCACG
GCCAATATCC TGACCATCAA GGAAATCCCG ACCGAGCTTC CCGCTGATGC CCCCGACGTG
GTGGAGGTGC GTGGCGAGGT CTATATGGCG AAAAGCGATT TTCTGGCGCT AAACGCCCAG
ATGGAGGCCG AGGGCCGCCA AACATATGTC AACCCGCGCA ATACGGCTGC CGGGTCGCTG
CGCCAGCTCG ATGCAAAAGT CACCGCCAGC CGCAAGCTGA AATTCTTCGC TTACGCTTGG
GGCGAGATGA GCACCATGCC TGCCGAGACG CAATCCGGCA TGGTCGAGGC CTTTAAGCGC
TGGGGCTTCC CGGTCAATCC GTTGACCCGG CGTCTGACGT CGGTTGAGGA GATCATCGCC
CATTACCGTG AGATCGGCCT TCAGAGAGCC GATCTGGATT ACGACATCGA TGGGGTGGTC
TATAAGGTTG ATCGGCTGGA TTTGCAGGCC CGGCTCGGCT TTCGGTCCCG CTCGCCACGC
TGGGCGACAG CCCATAAATT TCCAGCGGAA CAGGCCTTTA CCACAGTGGA GGCCATCGAC
ATCCAGGTGG GCCGCACCGG CGCGCTGACG CCGGTGGCGC GGCTGGAGCC GATTACCGTC
GGTGGCGTGG TTGTGACCAA TGCGACCCTG CACAATGCCG ATTATATCGA GGGTATCGGC
AACGGCGGCG AGCGTATTCG CCCGGAAGGC CATGACATTC GCATCGGCGA TACCGTGATC
GTCCAGCGAG CCGGTGACGT CATTCCGCAG GTGCTGGATG TGGTTCTGGA AAAGCGGCCT
GAGACCTCAG TGAAATACGA ATTTCCGAAA ACCTGCCCGG TTTGCGGTAG CCATGCGGTG
CGCGAGAAAA ACGAGAAGAC CGGCAAGCTG GATTCTGTGA CCCGCTGCAC GGGCGGTTTC
GTCTGCTCGG CGCAGGCCAA GGAGCACATC AAGCACTTCG TCTCCCGCAA TGCCTTCGAC
ATTGAAGGGC TGGGTACCAA GCAGGTGGAT TTCTTCTTCG AGAGTGAAGA CCCAGCGTTG
ATGATCCGCA CTGCGCCGGA TATTTTCACC CTCAAACAGC GGCAGGAAGC TTCGTCACTG
ACCCGCCTTG AAAATATTGA CGGTTTTGGC CGGGTCAGCG TCCGCAAACT GTTCGATGCC
ATCGATGCGC GCCGCGAGAT TGCCCTCAAC CGCTTTATCT TCGCGCTTGG CATCCGTCAT
GTCGGCGAAA CCACCGCCAA GCTGCTGGCC CGCTCCTATG GCTCCTACGC GGCGTTTGCT
GACGCCATGC AAGAGGCCGC CCCAAAATTT GGTGAGGCCT GGAACGAGTT GAACAGCATT
GATGGCATCG GCGAAGTGGT CGCGGCCTCC ATGGTTGAAT TCTTCAAGGA ACCTCGCAAT
CTTGAAGTTG TCTCCCGCTT GTTGAAGGAA GTGACTCCAC TGGATGCAGA AGCCGTTACG
GCAAGCGATA GCCCGGTGGC CGGGAAAACC GTGGTGTTCA CCGGCTCACT GGAGCGCTTT
ACCCGTGATG AGGCGAAGGC CAGGGCCGAA AGCCTCGGTG CCAAGGTGGC CGGATCGGTC
TCGAAAAAGA CCGATTACCT GGTCGCCGGA CCGGGCGCTG GTTCCAAGCT GGACAAGGCC
CGTGAGGTGG GCGTGACTGT CATGACCGAG GACGAGTGGC TGGCGCTGAT CGGCTGGTGA
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| Protein sequence | MADALIPVED LSEEQAGQEL IRLAAAIAHH DALYHGKDQP EISDADYDAL KRRNDAIEAR
FPTLVRSDSP SQRVGAAPAG IFSQITHARP MLSLDNTFSD EDVADFVASV YRFLGVMPDN
SIAFTAEPKI DGLSMSIRYE HRKLKTAATR GDGTTGENVT ANILTIKEIP TELPADAPDV
VEVRGEVYMA KSDFLALNAQ MEAEGRQTYV NPRNTAAGSL RQLDAKVTAS RKLKFFAYAW
GEMSTMPAET QSGMVEAFKR WGFPVNPLTR RLTSVEEIIA HYREIGLQRA DLDYDIDGVV
YKVDRLDLQA RLGFRSRSPR WATAHKFPAE QAFTTVEAID IQVGRTGALT PVARLEPITV
GGVVVTNATL HNADYIEGIG NGGERIRPEG HDIRIGDTVI VQRAGDVIPQ VLDVVLEKRP
ETSVKYEFPK TCPVCGSHAV REKNEKTGKL DSVTRCTGGF VCSAQAKEHI KHFVSRNAFD
IEGLGTKQVD FFFESEDPAL MIRTAPDIFT LKQRQEASSL TRLENIDGFG RVSVRKLFDA
IDARREIALN RFIFALGIRH VGETTAKLLA RSYGSYAAFA DAMQEAAPKF GEAWNELNSI
DGIGEVVAAS MVEFFKEPRN LEVVSRLLKE VTPLDAEAVT ASDSPVAGKT VVFTGSLERF
TRDEAKARAE SLGAKVAGSV SKKTDYLVAG PGAGSKLDKA REVGVTVMTE DEWLALIGW
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