| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2812 |
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| Symbol | htrA |
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| ID | 7385942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2341285 |
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| End bp | 2342871 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651851 |
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| Product | serine protease |
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| Protein accession | YP_002550036 |
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| Protein GI | 222149079 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.498431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCA CGATGGGGAA GCTTATGATC AAGTGTTGCG GACCGGCCAC CCGCCTTCTG
ACCTCTCTTG TTGTCGGGGG CATGGTCAGC TTTGGGCCTG CGGCCACGAG CACGGCTGCC
TTCGGCCAGG TCAAGACCGC AGCCCCGGTT CCCCCGCCGC CGCCAGCCTC TGGCGCGTCC
GCAACGCCTG GACCCGCGCA GGGTGGCCCC GCGCCCGTCG CTGATCTCGC CGAGGGACTT
CTCGGTGCGG TGGTCAACAT CGCGACGTCG CAGAATGTCG ATGATGACGA TGCAGCGCCG
CTGCCACAGG TGCCGAAAGG GTCGCCCTTT GAGGATCTGT TTGAAGATTT CTACAAGAAT
CGCGAGGGCA AAGGCAGCAA CCATAAGGTC AATTCGCTCG GCTCCGGCTT TGTTATCGAT
CCCGCTGGTT ACATCGTCAC CAACAACCAT GTCATCGAGA ATGCCGATGA TATCGAAGTG
ATTTTCTCCG ACGGTTCGAA ATTGCAGGCC AAGTTGATTG GCACCGACAC CAAGACCGAT
CTTTCGCTGT TGAAGGTTGA ACCAACGGAA CCGCTGACGG CGGTAAAATT CGGCGATTCG
AAGGTGATGC GGATCGGCGA TTGGGTGATG GCGATCGGCA ATCCCTTCGG GCTTGGCGGT
TCGGTGACGC TCGGCATCGT TTCGGCCCGG GGCCGAAATA TCAATGCCGG ACCTTATGAC
AATTTCATTC AGACCGATGC GGCGATCAAC AAAGGCAATT CCGGTGGCCC GTTGTTCAAC
ATGCGAGGCG AGGTGATTGG TATCAATACC GCGATCATTT CGCCGAGTGG CGGCTCCATT
GGTATTGGCT TTGCCGTGCC GTCGGAACTG GCCGAAAATG TCATCAAGCA GCTCCGCGAC
TTTGGCGAGA CGCGGCGCGG CTGGCTGGGC GTGCGCATTC AGCCGGTGCC GGATGATCTG
GCCAAGTCGG CAGGAATCAA ATTGGGCCGG GGTGCGCTGG TCAGCAGCAT TATTGAAGAC
GGTCCGGTGG CCAAGGGGCC GCTTAAAACC GGAGACGTGA TTATTTCCTT CGGCGGCAAG
GATATTGCCG AAAGCCGCGA TCTGGTTCGC ACGGTGGCCG AAAGCCCGAT CAATCAGGAT
ATCGATGTCG TGGTGTTTCG TGACGGCAAG CGGGAAACAC TGAAAGTGAA GCTGGCGCAA
TTGCCTGACG ACAAGGCGAC GGAAGCCAAG GACAGCGAAC AGGCCGATCC AAAAGCCAGC
GACAGCGAGG ACACGGATGA AGCGGCCAGC GGCATGGTGC TTGGCATGAG TGTCGAGGCG
CTTGATGATG AGAAGCGGGC CGCCAATTCG ATTGCCAAGA GCGTCGAGGG CTTGCTGATA
ACAGATGTGC AGCAGGGCTC CGCCGCTGAC CAGAAGGGCT TGAAAACCGG TGAAGTGATC
GTGGAAGTGG CGCAGGAATT CGTCGCCACG CCAGAAGCCT TGGCGGAGAA AATCGACAAG
CTGAAATCAG ATGGTCGTCG TGCCATTCAC CTGATGGTGG CAACCCCGCA GGGCGATCTG
CGTTTCGTGG CCGTGCCGCT GGAATAG
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| Protein sequence | MKLTMGKLMI KCCGPATRLL TSLVVGGMVS FGPAATSTAA FGQVKTAAPV PPPPPASGAS
ATPGPAQGGP APVADLAEGL LGAVVNIATS QNVDDDDAAP LPQVPKGSPF EDLFEDFYKN
REGKGSNHKV NSLGSGFVID PAGYIVTNNH VIENADDIEV IFSDGSKLQA KLIGTDTKTD
LSLLKVEPTE PLTAVKFGDS KVMRIGDWVM AIGNPFGLGG SVTLGIVSAR GRNINAGPYD
NFIQTDAAIN KGNSGGPLFN MRGEVIGINT AIISPSGGSI GIGFAVPSEL AENVIKQLRD
FGETRRGWLG VRIQPVPDDL AKSAGIKLGR GALVSSIIED GPVAKGPLKT GDVIISFGGK
DIAESRDLVR TVAESPINQD IDVVVFRDGK RETLKVKLAQ LPDDKATEAK DSEQADPKAS
DSEDTDEAAS GMVLGMSVEA LDDEKRAANS IAKSVEGLLI TDVQQGSAAD QKGLKTGEVI
VEVAQEFVAT PEALAEKIDK LKSDGRRAIH LMVATPQGDL RFVAVPLE
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