Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2805 |
Symbol | |
ID | 7385938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2337316 |
End bp | 2338452 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643651847 |
Product | hypothetical protein |
Protein accession | YP_002550032 |
Protein GI | 222149075 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.404247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGAGA TCGTGCCTGT TTCGAAAGAC AAGCAGAACT CAACGGCCTA TAAAATTCCC GGGGCTACAT TCATTCTATG CGCAGCGTTT CTAATCGTGT TCAGGCTGCA AACGGAATGG GCATTCAGCC CGCAAAACAA GACTGGTTTC GACCTTCAGA CCTTGGTCGC ATTCGGGGCA GCATCCAGAA ACCTTGTCTT TTCCGGCGAT TGGTTCCGCT TGTTTGCCGC GAACTTCATC ACTGACGAAG CCATTCAACT GCTTCTCAAT CTACCCTTCC TCATTTTTGC CGGGATGTCA CTCGAAAGGC ATTTCGGCTC CGTATGCTTT CTGGCGATTT TCTTCGGGGG CTGCATTGTC GGCACATCCT TTTCCGTGCT CTTCAGCAAC CCTGAAATTA TTCACTTCGG CCCGATTGGC GGACTGACGG CAATCCTAAT AGCAAGAACC ATTTCAGTGC CGCAAACACC CGGCTCCCCG TCCCCCAGCT CCCCGTCCAG AGGGAAGCTA TATCGGCAAG CTGCCGCACA TGGACGGATG TTTTTCACAA TCGGCCTTCC TCTTATTTAT TTAAAGACAA ACCCGGCGTC GTATTTCGGC AATATCATGG GTGGGGTCTG TATCGGACTA GCCTGCGGCA TCCTTCTGCG GTGCAAATGG CACATCAAAT ACGCGGCGCG CGTCAGGAAA GCAGCATCGA CGCTGGTCTT TGCAAATGCG GCGATGGCGA CTTATGCCAT ATACGCGGTT AACGCCGGAT TTGGAGATTA CGGATATCTA CACAGTGTAG CCCCTGCCCA GGAAACCAGG CGGTTAATTG CAGACGCGCA AAGAGGCGGC ACCCTTTATA TAAAATCCTA TCCTCTCGAT CCGATCGGCT ATGCCCTTAT CGCCGATCAT GCTCTTGGCG AACACGATTA TCCGGCGGCT GAAAAATACG CCAGGAAGGG CTTATCTATC GTTCAGCAGA TCAACAGACC CGAATTGCAG TCAACAAAGA TGATGATACT CGCCGAACTC GCCCTGAGTT TGCGCGGAGA GAACGAAATG GATGCGGCCA AGGAACAGGC GAAGACGCCA TGTTCTGGAT GGACGAAGAT TGCAAGGACG CTGCGAAAAG ATGGCTTGTG TGGCTAG
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Protein sequence | MDEIVPVSKD KQNSTAYKIP GATFILCAAF LIVFRLQTEW AFSPQNKTGF DLQTLVAFGA ASRNLVFSGD WFRLFAANFI TDEAIQLLLN LPFLIFAGMS LERHFGSVCF LAIFFGGCIV GTSFSVLFSN PEIIHFGPIG GLTAILIART ISVPQTPGSP SPSSPSRGKL YRQAAAHGRM FFTIGLPLIY LKTNPASYFG NIMGGVCIGL ACGILLRCKW HIKYAARVRK AASTLVFANA AMATYAIYAV NAGFGDYGYL HSVAPAQETR RLIADAQRGG TLYIKSYPLD PIGYALIADH ALGEHDYPAA EKYARKGLSI VQQINRPELQ STKMMILAEL ALSLRGENEM DAAKEQAKTP CSGWTKIART LRKDGLCG
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