Gene Avi_2805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2805 
Symbol 
ID7385938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2337316 
End bp2338452 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content52% 
IMG OID643651847 
Producthypothetical protein 
Protein accessionYP_002550032 
Protein GI222149075 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.404247 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGAGA TCGTGCCTGT TTCGAAAGAC AAGCAGAACT CAACGGCCTA TAAAATTCCC 
GGGGCTACAT TCATTCTATG CGCAGCGTTT CTAATCGTGT TCAGGCTGCA AACGGAATGG
GCATTCAGCC CGCAAAACAA GACTGGTTTC GACCTTCAGA CCTTGGTCGC ATTCGGGGCA
GCATCCAGAA ACCTTGTCTT TTCCGGCGAT TGGTTCCGCT TGTTTGCCGC GAACTTCATC
ACTGACGAAG CCATTCAACT GCTTCTCAAT CTACCCTTCC TCATTTTTGC CGGGATGTCA
CTCGAAAGGC ATTTCGGCTC CGTATGCTTT CTGGCGATTT TCTTCGGGGG CTGCATTGTC
GGCACATCCT TTTCCGTGCT CTTCAGCAAC CCTGAAATTA TTCACTTCGG CCCGATTGGC
GGACTGACGG CAATCCTAAT AGCAAGAACC ATTTCAGTGC CGCAAACACC CGGCTCCCCG
TCCCCCAGCT CCCCGTCCAG AGGGAAGCTA TATCGGCAAG CTGCCGCACA TGGACGGATG
TTTTTCACAA TCGGCCTTCC TCTTATTTAT TTAAAGACAA ACCCGGCGTC GTATTTCGGC
AATATCATGG GTGGGGTCTG TATCGGACTA GCCTGCGGCA TCCTTCTGCG GTGCAAATGG
CACATCAAAT ACGCGGCGCG CGTCAGGAAA GCAGCATCGA CGCTGGTCTT TGCAAATGCG
GCGATGGCGA CTTATGCCAT ATACGCGGTT AACGCCGGAT TTGGAGATTA CGGATATCTA
CACAGTGTAG CCCCTGCCCA GGAAACCAGG CGGTTAATTG CAGACGCGCA AAGAGGCGGC
ACCCTTTATA TAAAATCCTA TCCTCTCGAT CCGATCGGCT ATGCCCTTAT CGCCGATCAT
GCTCTTGGCG AACACGATTA TCCGGCGGCT GAAAAATACG CCAGGAAGGG CTTATCTATC
GTTCAGCAGA TCAACAGACC CGAATTGCAG TCAACAAAGA TGATGATACT CGCCGAACTC
GCCCTGAGTT TGCGCGGAGA GAACGAAATG GATGCGGCCA AGGAACAGGC GAAGACGCCA
TGTTCTGGAT GGACGAAGAT TGCAAGGACG CTGCGAAAAG ATGGCTTGTG TGGCTAG
 
Protein sequence
MDEIVPVSKD KQNSTAYKIP GATFILCAAF LIVFRLQTEW AFSPQNKTGF DLQTLVAFGA 
ASRNLVFSGD WFRLFAANFI TDEAIQLLLN LPFLIFAGMS LERHFGSVCF LAIFFGGCIV
GTSFSVLFSN PEIIHFGPIG GLTAILIART ISVPQTPGSP SPSSPSRGKL YRQAAAHGRM
FFTIGLPLIY LKTNPASYFG NIMGGVCIGL ACGILLRCKW HIKYAARVRK AASTLVFANA
AMATYAIYAV NAGFGDYGYL HSVAPAQETR RLIADAQRGG TLYIKSYPLD PIGYALIADH
ALGEHDYPAA EKYARKGLSI VQQINRPELQ STKMMILAEL ALSLRGENEM DAAKEQAKTP
CSGWTKIART LRKDGLCG