| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2758 |
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| Symbol | vgrG |
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| ID | 7388409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2297488 |
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| End bp | 2299812 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651811 |
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| Product | vgrG protein |
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| Protein accession | YP_002549997 |
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| Protein GI | 222149040 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGACG TTCTGTCGCC GACCGATTTC ATCCAGGCAA GCCGTGTTCT GAGACTGTCG
TCACCTCTGG GTGATGACCA GTTGCTGCCG GAGCGGATGA CGGTGGAGGA AGGCGTCAAC
CGTCTGTTCG AGATTACCCT GTCAGTGCGT GCCAAGCGCG AGGCGGTCAA GCCGGAAGAG
CTGATCGGCA AGCTGGTGGA TGTGTCGCTG GAGATCCGTC AGGGCGAGTT CGATGAGGGT
GGCGTGCGCC GGCCGTTCAA TGGCCTGGTC ACCAATCTGT CCGAGGGGCC GCCGGTGACA
CGAGGCCTGC GGTCTTATAC GCTGACCATC CGGCCGCAGT TCTGGCTGCT GTCGCGTCGC
TCAGACTGCC GCATCTGGCA GAACATGACC TCCATGCAGG TGCTGGAGAC GCTGCTGTCG
GAACATGGTC TTCCAGCGGC TGCCTATGCA CCACTGCACA AAGCACCGCC CGCGCGTGAG
TACAGCGTGC AATGGAACGA GACGGATCTC GATTACCTGC TGCGCCGGTT CGAAGAAGAC
GGGTTGTTCT ACTGGTTTGA ACATGAGGTG GGCGTCCACC GCATCAAGGT CAGCGACAGC
AAGGTCGCCT GGAGCCAGCC TTCGGCCTCT GCGGAAGGTG TCGAGAAGGT AAGATTAGCG
CAAGGCTCGT CGGATCGCAA CCATATCAAC GAGTGGATGC GGCAGTTTGC CTTCATCCCC
GGCCAGCGCG CCGGCGCCGA CTGGAATTTC GAGACGCCGA GCACCGTGCC ACTCAATGTC
ACGCCATCGC TGATCCAGAT GCCGGGGGCG GCCAAGCGCG AGCTTTACGA ATATCCCGCC
CGCATCAGCG ATGTGAAGGA AGCCGAGCAG GCCGAGACCT TCCGCATGCA GGCGGTGGAG
GCCGATCATG AGCGGGTGAC GGGCAAGTCC AATGTCCGCT TTCTCGAAGC CGGCCGGCGC
TTCACGCCCT ATGAGGAGCC CCATCCCGAA CATCAATACG AAGAGCATGT GATCACCAGC
ATCACCCACT GGGTGGTCGA CCGCTCCTAT GAGACGACCG AGAACGATCC GGAATACCGC
AACGAATTCG AAGCGATCCC CTCGCGCGTG CCGCTGACCC CGCATCGCGA CACCAAGCGC
CCGCACATCG AGGGCGCGCA GGTGGCAATC GTCGCCGGTC CCTCCGGTGA AGAGATCCAC
ACGGATCAAT ATGGCCGCAT CAAGGTCTGG TATCCCTGGG ACAGGCGGGC GAAGAAGGAT
GGTTCCGACA CCTGCTGGAT ACGCGTCAAC CAAGCCTGGG GCGGTGGCAC CTGGGGCGCA
CAGGTTATTC CCCGCATCGG CATGGAAGTC ATGGTCTCGT TCGTGGACGG CGATCCGGAC
CGGCCGCTGG TCATTGGTGT CGTGCCCAAT CCGAAGAACC CCGTGCCCTA TGATCTTCCT
GCCAACAAGA CCCGCATGGT GCTGCGCTCC AACACTCACA AGGGCAGCGG CTTCAACGAG
ATGACCTTCG AGGACGAGAA CGGCAAGGAG AATATGTTCT TCCATGCCCA GAAGGATCAA
ACGACGCGGG TGCGCAATGA CCGCACCAAA CGCATCGACC GGCATGAAGT GGCCTCCATC
GGTGGCAACC GCGCCGTGGA AGTTTCTGGC AACCAGAAGC ACGAAATCGG CGGCTCGGTA
AACACCGTCG TTGGCGGCAC GGGGCCGATG GCCATGCTCA CCATGGCCGG CGTGCAGGCT
CTATCGGGCC AGACGGCCGG GCTGCTGGCC CAGGCAGCCC AGATCGCCGG CGGTGGCGGC
CCCGGCATTG CCAGTTTTGC CACGTCACTC GCCTCCTCTG CTCTGGGCTT TCTCGGTGCC
GGAGGTCTTT CCGCCCGCGA AGGCGTCGTC TCCGGCCCGA GCCCACGCGC GGACGCCGGT
ACGGCGCTGG CCGGATCTGG CACCGGCGTT GGTTCAGATG CCTCCAGCCT GTTCCCGCTG
CCCGGCATCA TGAACACCAT CGTCAGCAGC TTTAAGTCCG ACAGCATCGG CATTGCCCGT
GCCGAGCAGA TCGGCGTCAG CAAGGTGACG AATGTCGGGC AGACCTCGCT GGAAACCGTC
GGCAAGTTCA AGAAAGTCAT CGTCGGTGAA GAATTCGTCA TCGAATGCGG TGCGTCGAAG
TTCATCATGC GCAAGGATGG CACGGTGATC ATTCTCGGCA CGCAATTCAA CTTCACAGCG
TCGGGTCCAA CCCAGATCAA TGGAACTGTC GTGGATCTGA ACAAGCCGGG CGGCGGTTTT
GAAGAAGCCG ACCCCTCAGA GTCCGATTCC ACAGCAAAAG GCTGA
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| Protein sequence | MDDVLSPTDF IQASRVLRLS SPLGDDQLLP ERMTVEEGVN RLFEITLSVR AKREAVKPEE
LIGKLVDVSL EIRQGEFDEG GVRRPFNGLV TNLSEGPPVT RGLRSYTLTI RPQFWLLSRR
SDCRIWQNMT SMQVLETLLS EHGLPAAAYA PLHKAPPARE YSVQWNETDL DYLLRRFEED
GLFYWFEHEV GVHRIKVSDS KVAWSQPSAS AEGVEKVRLA QGSSDRNHIN EWMRQFAFIP
GQRAGADWNF ETPSTVPLNV TPSLIQMPGA AKRELYEYPA RISDVKEAEQ AETFRMQAVE
ADHERVTGKS NVRFLEAGRR FTPYEEPHPE HQYEEHVITS ITHWVVDRSY ETTENDPEYR
NEFEAIPSRV PLTPHRDTKR PHIEGAQVAI VAGPSGEEIH TDQYGRIKVW YPWDRRAKKD
GSDTCWIRVN QAWGGGTWGA QVIPRIGMEV MVSFVDGDPD RPLVIGVVPN PKNPVPYDLP
ANKTRMVLRS NTHKGSGFNE MTFEDENGKE NMFFHAQKDQ TTRVRNDRTK RIDRHEVASI
GGNRAVEVSG NQKHEIGGSV NTVVGGTGPM AMLTMAGVQA LSGQTAGLLA QAAQIAGGGG
PGIASFATSL ASSALGFLGA GGLSAREGVV SGPSPRADAG TALAGSGTGV GSDASSLFPL
PGIMNTIVSS FKSDSIGIAR AEQIGVSKVT NVGQTSLETV GKFKKVIVGE EFVIECGASK
FIMRKDGTVI ILGTQFNFTA SGPTQINGTV VDLNKPGGGF EEADPSESDS TAKG
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