Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2753 |
Symbol | tnp |
ID | 7388405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2293634 |
End bp | 2294494 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643651808 |
Product | transposase |
Protein accession | YP_002549994 |
Protein GI | 222149037 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.403453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGTTCG CGTTCATTGC AAAGCACCGT TCGATCTGGC CGGTGGCATG GCTATGCGAA GCGCTGGGTG TCTCTCGTTC CGGCTTCCAT GCCTGGCTCA ATCGTTCTCC GAGCCACCAT GCCCGGTATG ACGAGGTTCT CCTGGACAAG ATCAAAGGCA GCTTCAAAGA TAGTGACCGC ACCTATGGTG CCCGGCGTGT CTGGCACGAT CTTCTTGCTG AAGGCTTTTC CTGTGGCCTG CATCATGTCG AACGGCTCAT GCGCACGAAC GCGCTGAGAG CAAGGCCGAG AAGACGTGGC TTGCCGAAGG ATGCCGGCGA ACGCTCGGTC ATCATGCCGA ATGTTCTGGA CCGCCAGTTT GCGGCGGACA GGCCGAACCA GAAATGGGTC GCTGATTTTA CCTATCTATG GACCGCAGAG GGCTGGCTTT ATGTCGCCGC CGTCATCGAC CTGTTCTCAC GTCGTGTTGT CGGCTGGTCG ATGAACTCCA GCATGACCTC CCAGCTCGTG ACCGATGCTC TGATCATGGC GATCTGGCGC AGAGGAAAAC TGGACGCGTT GCTGCATCAC TCGGATCAGG GCAGCCAATA TACCAGCGAA CAGTTCCAGC GCCTCATGGC CGACCACGGC ATCACCTGTT CGATGAGCCG GTCGGGCAAT GTCTGGGACA ATGCCGCCAT GGAAAGCTTC TTCTCATCAC TCAAAACGGA AAGGACGGCC CGCAAGGTCT ACAGAACCAG GTACGACGCC AAGGCAGATG TGTTCGACTA CATCGAGCGC TTCTATAATC CTAAGCGTCG GCATTCGACA CTGGGTTATC TCAGCCCGAT GGAATTTGAA AACAAGGTGG GATTAGCTTA A
|
Protein sequence | MKFAFIAKHR SIWPVAWLCE ALGVSRSGFH AWLNRSPSHH ARYDEVLLDK IKGSFKDSDR TYGARRVWHD LLAEGFSCGL HHVERLMRTN ALRARPRRRG LPKDAGERSV IMPNVLDRQF AADRPNQKWV ADFTYLWTAE GWLYVAAVID LFSRRVVGWS MNSSMTSQLV TDALIMAIWR RGKLDALLHH SDQGSQYTSE QFQRLMADHG ITCSMSRSGN VWDNAAMESF FSSLKTERTA RKVYRTRYDA KADVFDYIER FYNPKRRHST LGYLSPMEFE NKVGLA
|
| |