| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2707 |
|---|
| Symbol | attA2 |
|---|
| ID | 7388367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2244031 |
|---|
| End bp | 2244810 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643651768 |
|---|
| Product | ABC transporter membrane spanning protein (mannopine) |
|---|
| Protein accession | YP_002549955 |
|---|
| Protein GI | 222148998 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.139329 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTTGA CCCTGCTACT CAGTTTTCAT GCGTATGATT TTACCACCGG TATCCAACCT
GGCTGGACCC TCACCAATTA TGCCGATGTG CTTACAGATT CCTATTTTCA TGAGATCTTT
TCCCGCACCT TTGGTCTCGC ACTGCTGGTC ACGCTGATCT GTTTGCTGAT TGGCGTACCG
GAAGCCTATA TCCTGTCGCG GCTCGGCAAC CCTTGGCGGT CCATTTTTCT CCTTGTCGTT
CTTGGCCCTT TGCTAATTTC TGTCGTGGTG CGCACTCTAG GCTGGGCATT GCTGTTTGGC
GGTAATGGTA TTCTCAGCAT GGTGGCGCAA GGCCTCGGCT TCAGCGACCG ACCGATGAGC
CTGATGTTCA CCTTTGCGGG CATGACAATT GCGCTCGTGC ACGTGCTTGT CCCCTTCATG
GTCATCTCGG TTTGGGCCTC CTTGCAAAAG ATTGACCCGC AGAGCGAAAA TGCAGGTTTG
ACGCTTGGCG CATCGAAACT CACCGTGTTT CGGCGCATTA CCTTGCCGCA GGCAATGCCG
GGTATTCTAT CGGGCAGCAT TATGGTCTTT GCCCTCACGG CCAGTGCATT TGCAACGCCT
GCCATTATTG GCGGACGGCG TTTAAAAGTG GTCGCGACCG CTGCCTATGA CCAATATCTC
AACACATTGA ATTGGCCGCT TGGTGCCACC ATCGCCCTGC TTTTGCTCGT CGCAAACGTC
GTCATCATCA CCAGCTACAA TAAGTTGGTT GAGCGGCGCT TTGCCAAAGT CTTTGAATAG
|
|---|
| Protein sequence | MVLTLLLSFH AYDFTTGIQP GWTLTNYADV LTDSYFHEIF SRTFGLALLV TLICLLIGVP
EAYILSRLGN PWRSIFLLVV LGPLLISVVV RTLGWALLFG GNGILSMVAQ GLGFSDRPMS
LMFTFAGMTI ALVHVLVPFM VISVWASLQK IDPQSENAGL TLGASKLTVF RRITLPQAMP
GILSGSIMVF ALTASAFATP AIIGGRRLKV VATAAYDQYL NTLNWPLGAT IALLLLVANV
VIITSYNKLV ERRFAKVFE
|
|---|
| |