| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2682 |
|---|
| Symbol | fadL |
|---|
| ID | 7388349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2220929 |
|---|
| End bp | 2221966 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643651750 |
|---|
| Product | long-chain fatty acid transport protein |
|---|
| Protein accession | YP_002549937 |
|---|
| Protein GI | 222148980 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0586571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGT CAAGGCTCGC GCTGGCGCTG TCTTCGTCTC GCCAGAGCGT AAATATGACA
CGGTGGGCGG ATCGAAATCA TCTGACGGTA GTTTTAGTGA CAGTTACTGG GATTCCCAGT
GTTGCCGCCA AGGTCCAGAT TTCCGATGCA GTGGGCTGTG CCTTTACCTA TACCCAGCCC
TTCGGCGCAT CCTCTACCTA TGGAACGGAT ACACGTCGTG CTGACCAGTT GGCCGGGGCT
GCTTCAGGCA ATTTCAACTA TTACACCAAG AAGCATTTCA TCACCAATGA ATATGGCGGC
ACGTGCGCCG TGCGTTTCGA TGTTGGTCCT GGCAAGCTCT ATGTGTTGGG TGGCGGTTTC
TTCCAGGATT TCGATTACAC GGCCGATTCC TATTATGGAA CGCTGCACCT GAAGGATAAT
TCGTCTGTCG GATATCGCTT GGGTGTGGGC TATGACATTC CCGAATATGC GATGCGTGCC
CAGCTGATGT ATCGTTCGCA GATCAAGGAA GAGGCCGATG GTGACTTCAC GCCGCGTGCC
CTGTCGGCGC TACTGGGCAC TGGTGCCGTT TCTGCCGATG GTTATGGCAC CTTGCCTCAA
TCACTCAAGC TAAGCTTGCA AAGCGGTATC GCACCCGGTT GGCTTGCCTA CGGCTCTGTC
AAGTGGACGG ACTGGAGCGT TTTGCAAACG CTTAACTACA ATATTACTGG CCTCGGCGCC
CAGAGGGACG ATTTTTTCTG GAAAGATGGC TGGACCATCC AGGCGGGCAT TGGCCACAAG
TTTAATGATC GCGTTTCCGG TACCGTCAAT ATCACCTGGG ACAAGGGTGT AGGCAATGGC
GCCGATATCA TGACCGATAC CTGGACGTTG GGTGTGGGAA CCGAGATCAA GCTTGGCCCA
GGCGATCTGC GTGTTGGGGC AGGGGTCAGC TACCTCACCG CCGGGAGCCA AAGCTATTCC
AAGGGGGCAT CCTATGATGC GACCGCTAAT GGAGACTGGG CCTATGCCTT CGGTAGCTCC
TACCAGATCA AGTTCTGA
|
|---|
| Protein sequence | MGKSRLALAL SSSRQSVNMT RWADRNHLTV VLVTVTGIPS VAAKVQISDA VGCAFTYTQP
FGASSTYGTD TRRADQLAGA ASGNFNYYTK KHFITNEYGG TCAVRFDVGP GKLYVLGGGF
FQDFDYTADS YYGTLHLKDN SSVGYRLGVG YDIPEYAMRA QLMYRSQIKE EADGDFTPRA
LSALLGTGAV SADGYGTLPQ SLKLSLQSGI APGWLAYGSV KWTDWSVLQT LNYNITGLGA
QRDDFFWKDG WTIQAGIGHK FNDRVSGTVN ITWDKGVGNG ADIMTDTWTL GVGTEIKLGP
GDLRVGAGVS YLTAGSQSYS KGASYDATAN GDWAYAFGSS YQIKF
|
|---|
| |