| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2656 |
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| Symbol | crtB |
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| ID | 7386649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2196779 |
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| End bp | 2197591 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643651729 |
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| Product | phytoene synthase |
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| Protein accession | YP_002549916 |
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| Protein GI | 222148959 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.21364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCGGG AGATCGACCG CGACCGGTAT TTGGCCTGCC TTCTCTCCCC GCCGGAAAAA
CAGCCTGCCT TGGCAGCGCT CTATGCCTTC AATGCCGAAC TTGCCCGGGT GCGCGATCTG
GTGCGGGAGC CCTTGCCGGG CGAAATCCGG CTGCAATATT GGCGTGACCT GCTTTCGGGC
AAGGGGCATG GCGATACCAC GGCCAATCCG CTGGCGGCAG GGCTTTTGGC GGCGGTGGAA
TCCTATCGTT TACCGGTTCA ACCCTTGCTC GACATGATCG ATGCGCGGAT TGCCGATCTT
TACGACGATC CGATCGGGCC AAGATCGGCG CTGGAAGGCT ATGCGGGAGA GACCGCCTCG
GCGCTGATCC AACTGGCTAG CCTGGTGCTG GATGCCGGGG CCGCGCTGAA TTGCGCAACC
ATTGCCGGTC ATGCCGGGGT TGCTCAGTCC ATTGCCGGCC TGCTGGCGCT GATGCCGCAG
CATCGGGCGC GGGGGCAACT TTACATTCCC GACGAAATCC TGGCGGCGAC TGGCCTTGAC
CGCGAGGCCT TCCTGTCGGG CAGGGACGAG ATGAGAATCG ATGGAGCAAT CGAAGCCTTT
GCCGGTCTGG GGCTTGATCA TCTTGCCAAG GCGCGGGCTG GCGGCAAGCT TCCTGCGTCT
CTGGTTCCGG CCTATCTGCC CGTGGCGCTT GCCGGTCCGA TTCTGCGGGA TGCTCGCCGG
CGCGGCGCCG ATATTCTGCA AACACCGATC CGCCGAGCCC AGTGGCGCCG CCAGCTGACG
CTGCTCCGCG CTAGCATGAC GGGACGATTC TAG
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| Protein sequence | MLREIDRDRY LACLLSPPEK QPALAALYAF NAELARVRDL VREPLPGEIR LQYWRDLLSG
KGHGDTTANP LAAGLLAAVE SYRLPVQPLL DMIDARIADL YDDPIGPRSA LEGYAGETAS
ALIQLASLVL DAGAALNCAT IAGHAGVAQS IAGLLALMPQ HRARGQLYIP DEILAATGLD
REAFLSGRDE MRIDGAIEAF AGLGLDHLAK ARAGGKLPAS LVPAYLPVAL AGPILRDARR
RGADILQTPI RRAQWRRQLT LLRASMTGRF
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