| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2654 |
|---|
| Symbol | gidA |
|---|
| ID | 7386647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2194542 |
|---|
| End bp | 2195999 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643651727 |
|---|
| Product | tRNA (uracil-5-)-methyltransferase Gid |
|---|
| Protein accession | YP_002549914 |
|---|
| Protein GI | 222148957 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
|---|
| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACA ACAACACCTA TTTCCCTATT CACATCATTG GCGGCGGGCT GGCTGGCTCC
GAAGCCGCCT GGCAGATCGC CGAGGCGGGC GTGCCGGTCA TTCTTCATGA GATGCGCGGC
CTTCGCGGTA CCGACGCCCA TAAGACCGAT AGCCTGGCCG AGCTTGTCTG CTCCAATTCC
TTCCGCTCCG ATGATGCCAC CGCCAATGCG GTCGGGGTTA TCCATGCGGA AATGCGGCTG
GCCGGCTCGT TGATCATAGC CTGCGCCGAC CGTCATCAGG TACCGGCAGG CGGCGCGCTT
GCCGTTGACA GAGATGGCTT TGCCGAAGCT GTGACGCAGG CGCTGCATGC CCACCCGCTG
GTAACCGTGG TGCGCGAGGA AATCACCGGC CTGCCGCCAC GCGATTGGGA TCTCAGCATT
ATCGCCAGCG GACCGCTGAC ATCACCGGCG CTGGCCGAGG CCATCCGCTC GGAAACCGGC
GAGGATGCCC TTGCCTTTTT CGACGCCATC GCCCCCATCG TCCACCGCGA CAGCATCAAT
ATGGATATCT GCTGGTATCA ATCGCGCTAT GACAAGGTGG GGCCAGGCGG TACGGGCAAG
GATTACATCA ACTGCCCACT GGATGAGGCC CAGTATAACG CCTTCGTTGA TGCATTGATT
GCCGGTGACG CGGTCGGCTT CAAAGAATGG GAAGGCACCC CCTATTTCGA CGGCTGCCTG
CCCATCGAAG TCATGGCGGA ACGCGGGCGT GAAACCCTGC GCCACGGGCC GATGAAGCCG
ATGGGGCTGA CAAATTCCCA TAATCCGACC GTGAAAGCCT ATGCTGTCGT GCAGCTGCGC
CAGGATAATG CGCTGGGCAC GCTCTATAAT ATGGTCGGTT TTCAGACCAA GCTGCGCTAC
GGTGCCCAAG CCGAGATTTT CCGGATGATC CCCGGTCTGG AAAACGCCGA ATTCGCCCGG
TTGGGTGGCC TGCACCGCAA TACCTATATC CATTCGCCCG TGCTGCTGGA TCAATCCCTC
TCCCTAAAGA GCAGACCGGG CCTGCGCTTT GCCGGGCAGA TCACCGGCTG CGAAGGCTAT
GTCGAGAGCG CCTCCATCGG CCTTCTGGCC GGTCGCTTTG CTGCTGCCGA GCGCAAGGGC
GAGGCCTTCA GTCCACCGCC TGTGACAACG GCGCTCGGTG CGCTGCTCAA CCATATTACC
GGTGGCCATA TCGTTTCCAA CGACGAGCCC GGTAAAAAGT CTTTCCAGCC GATGAACATC
AATTTCGGCC TGTTTCCGGA TCTGGAGCCG GGCTCCATCG TCAAGCCCGA GGGCGTGAAG
CGATTCCGGG GCAAGGACAA GACTGTCATG AAGCGCCAGT TGATCGCCAT CCGCGCCTTG
GCCCATTGCC GGGAATGGTT GGGCCTGCCG CCGCACATCC CACAGCCGGT TGAGCAACTG
GAAGACGCGG GCCTGTAA
|
|---|
| Protein sequence | MTDNNTYFPI HIIGGGLAGS EAAWQIAEAG VPVILHEMRG LRGTDAHKTD SLAELVCSNS
FRSDDATANA VGVIHAEMRL AGSLIIACAD RHQVPAGGAL AVDRDGFAEA VTQALHAHPL
VTVVREEITG LPPRDWDLSI IASGPLTSPA LAEAIRSETG EDALAFFDAI APIVHRDSIN
MDICWYQSRY DKVGPGGTGK DYINCPLDEA QYNAFVDALI AGDAVGFKEW EGTPYFDGCL
PIEVMAERGR ETLRHGPMKP MGLTNSHNPT VKAYAVVQLR QDNALGTLYN MVGFQTKLRY
GAQAEIFRMI PGLENAEFAR LGGLHRNTYI HSPVLLDQSL SLKSRPGLRF AGQITGCEGY
VESASIGLLA GRFAAAERKG EAFSPPPVTT ALGALLNHIT GGHIVSNDEP GKKSFQPMNI
NFGLFPDLEP GSIVKPEGVK RFRGKDKTVM KRQLIAIRAL AHCREWLGLP PHIPQPVEQL
EDAGL
|
|---|
| |