| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2642 |
|---|
| Symbol | |
|---|
| ID | 7386637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2184990 |
|---|
| End bp | 2185775 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643651717 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002549904 |
|---|
| Protein GI | 222148947 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATA TTGCCATCCA AGCCCTGATC TTCCTGTTTT TTGCCGCCTT CATTGCGGGT
TTTGTCGATT CCATTGCCGG TGGTGGCGGG TTGATCACCA TTCCCGCCAT GCTGATTGCC
GGTATTCCAC CGCTGGAAAC GCTGGGAACC AACAAATTGC AGGGCATGTT CGGCTCGGCC
TCTGCCACCA TCGCCTATGG CCGCAAGGGT CATGTCAACC TGAAGAAACA ATTGCCGATG
GCCGCCATGT CGGTGCTGGG CGGCGCGATT GGCGCTGTCA TCGCAACCTA TGTGCCGGGC
GATGTGCTGA AAGCACTGAT GCCGTTTTTG CTGGTGGCGA TTGCCGCCTA TTTCGCCCTG
AAGCCGAATA TTTCCGACGT CGATAGCCAC CAGCGGATGA CGCCTTTCCT GTTTGGCCTG
ACCCTTGCCC CGCTGATCGC CATTTATGAC GGCGTCTTCG GCCCCGGCAC CGGCTCTTTC
CTGATGCTGG CCTTCGTTTC GCTCGCCGGT TTCGGGATGT TGAAAGCCAC CGCCCACACA
AAACTGCTGA ATTTCGGCTC CAATGTCGGC GCCTTCCTGG TCTTCGTGTT CAATGGCGTG
GTTTTGTGGA AAATCGGCAT TGTCATGGGC ATCGGTCAGT TCCTGGGCGC ACAGACCGGC
TCGAAACTGG CAATGAAAAG CGGCGCCAAA ATTATCAAGC CGCTGCTGAT CGTCACCTGC
ATCGGGTTGG CGATAAAGCT GCTACTGGAC CCGACCAATC CCGTGCGGGT CTGGATGGGG
ATTTGA
|
|---|
| Protein sequence | MTDIAIQALI FLFFAAFIAG FVDSIAGGGG LITIPAMLIA GIPPLETLGT NKLQGMFGSA
SATIAYGRKG HVNLKKQLPM AAMSVLGGAI GAVIATYVPG DVLKALMPFL LVAIAAYFAL
KPNISDVDSH QRMTPFLFGL TLAPLIAIYD GVFGPGTGSF LMLAFVSLAG FGMLKATAHT
KLLNFGSNVG AFLVFVFNGV VLWKIGIVMG IGQFLGAQTG SKLAMKSGAK IIKPLLIVTC
IGLAIKLLLD PTNPVRVWMG I
|
|---|
| |