Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2590 |
Symbol | |
ID | 7386600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2139821 |
End bp | 2140834 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651679 |
Product | transcriptional regulator AraC family |
Protein accession | YP_002549867 |
Protein GI | 222148910 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAAA CGCCTGTTAA AAAACGCAAT ATCGTCTTTT TTCTTGTCCC GAATTTCACG CTATTGCCGT TTGCGGGCGC CATCGAAACA TTGCGCATTG CCAACAGGAT GCTGGGCTAT GCGGCTTATG AGTGGCGGCT CTGTTCAGTC GACGGCAACA AGGTGTCGTC TTCATCGGGC ATCAGCATCG AGGTCGATTC GTCGCTTGCC GATGAGCGCC GTTTCCTGGC CGGTGAAAAC CGGCCCAATA TGGCGATTGT CTGTTCCGGC GTCTTTGTCG AAGAGTTTAA CAACAAATCC GTCAACGCCT GGCTGCGAGA AGCCTATAAC CGCAACGTCG CGGTCGGCAG CCTTTGCACC GGCGCCCATG TGCTGGCCCA GGCCGGACTT TTGAACGGCA AGCGCTGCGC GATCCACTGG GAAAACCTGC CCGGATTTTC GGAAGCCTTC CCCCAGGCCG AAGTCTATGC CGATCTCTAT GAAGTCGACA GCAATCTCTA CACCTGCGCG GGCGGTACAG CTTCGCTTGA CATGATGCTC AACCTGATTG GCCAGGATTT TGGCGAGGGC CTCGTCAACC GGGTCTGTGA ACAACATCTG ACCGACCGGG TTCGGGCTGC CGGAGACCGC CAGCGCCTCC CGCTGCGCGC CCGCCTTGGC GTGCAGAACA ACAAGGTCTT GCAGATCATC GAATTGATGG AAGCAAGCCT GGCCGAGCCC TTGTCCCTGC TTGATATCGC CGACAAGGTG GATCTGTCAC GCCGCCAGAT CGAACGGTTG TTCCGCCAGG AAATGGGCCG CTCACCGGCG CGCTATTATC TGGAAATCCG CCTTGACCGT GCCCGGCATC TGCTGGTGCA ATCCTCGATG CCGGTGGTGG AAGTCGCCGT CGCCTGCGGC TTTGTCTCCG CCTCGCATTT TTCCAAATGC TACCGCGAAT TCTACAATCG CTCGCCCCAG CAGGAACGCG CCGAACGCAA ACTGGCAACG GCAAAAGCGG CGGTTGCCGC ATAA
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Protein sequence | MSKTPVKKRN IVFFLVPNFT LLPFAGAIET LRIANRMLGY AAYEWRLCSV DGNKVSSSSG ISIEVDSSLA DERRFLAGEN RPNMAIVCSG VFVEEFNNKS VNAWLREAYN RNVAVGSLCT GAHVLAQAGL LNGKRCAIHW ENLPGFSEAF PQAEVYADLY EVDSNLYTCA GGTASLDMML NLIGQDFGEG LVNRVCEQHL TDRVRAAGDR QRLPLRARLG VQNNKVLQII ELMEASLAEP LSLLDIADKV DLSRRQIERL FRQEMGRSPA RYYLEIRLDR ARHLLVQSSM PVVEVAVACG FVSASHFSKC YREFYNRSPQ QERAERKLAT AKAAVAA
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