Gene Avi_2575 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2575 
Symbol 
ID7386590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp2129461 
End bp2130513 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content60% 
IMG OID643651669 
ProductABC transporter nucleotide binding/ATPase protein 
Protein accessionYP_002549857 
Protein GI222148900 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4175] ABC-type proline/glycine betaine transport system, ATPase component 
TIGRFAM ID[TIGR01186] glycine betaine/L-proline transport ATP binding subunit 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.5726 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAGTC ACGGCATAGA CATCCGCAAT CTCTACAAGA TTTTCGGCCC CGATGAGAAA 
ACCCATATCG ACGCCGTACG CCAGGGCATC ACCAAGGCCG AGTTGAATGA CAGGCATCAC 
CATGTGCTCG GCCTGCGCGA CATCAGCATC GACATGCCCG GTGGTGAGAT CACCGTGGTG 
ATGGGGCTTT CTGGCTCCGG CAAATCCACG CTGATCCGCC ATATCAACCG GTTGATCGAA 
CCGACAGCGG GCGAAGTGCT CTATGATGGA ACCGATATAT GCGCCATGTC GCCAGCGCAA 
CTGCGTGATT TCCGGCGCCG GAAAACCGCG ATGGTCTTTC AGAAGTTCGG CCTGCTGCCA 
CATCGAACCG TGATGGAAAA CGTCCTCTAC GGCCTCGATA TTCAGGGCAT GCCACGGCAG 
GAAAGTCTTG CCAAGGGGCA TTACTGGATC GAGCGGGTCG GGCTTTCCGG CTTTGAGAAT 
CATTACCCGA ACCAGCTTTC CGGTGGCATG CAGCAGCGCG TCGGCCTGGC GCGGGCCTTG 
GCAACCGATG CCGATATCCT CTTGATGGAC GAGGCCTATT CCGCGCTGGA CCCGCTGATC 
CGGGTCGATA TGCAGACCAT GCTGATCGAC TTGCAGCAGG AATTGCAAAA GACCGTGGTG 
TTCATCACCC ACGATCTGGA CGAGGCTTTG CGTCTGGGCG ACAAGATCGC CATTCTGCGC 
GATGGCGAGG TGGTGCAGCA GGGCAGCGGT CAGGATATCG TGCTGCGTCC AGCGGACGAT 
TACATCTCCG CCTTCGTGCG CGAGGTCAAT CGCGGTCGGG TGATCCGCAT CGGCACGGTG 
ATGGTCCCAG CGCGTAATCA ATCAGGCCAG TTCAAGCTCA CCGCCCGCAC GACACTGGAA 
GCGGCGGCCC GGGCCATGGT CGAGCAAGGC GTCACAGAGG CGCAAGTGAC CGATAAAGCG 
GGTCACCAGA TCGGCACCAT CGACCTGTCG ATCATCCTTT CGGCCATGGT CTCACCTGCG 
CACAGCGTCC AACCGGCGCT AGCAGCGGAA TAA
 
Protein sequence
MASHGIDIRN LYKIFGPDEK THIDAVRQGI TKAELNDRHH HVLGLRDISI DMPGGEITVV 
MGLSGSGKST LIRHINRLIE PTAGEVLYDG TDICAMSPAQ LRDFRRRKTA MVFQKFGLLP 
HRTVMENVLY GLDIQGMPRQ ESLAKGHYWI ERVGLSGFEN HYPNQLSGGM QQRVGLARAL 
ATDADILLMD EAYSALDPLI RVDMQTMLID LQQELQKTVV FITHDLDEAL RLGDKIAILR 
DGEVVQQGSG QDIVLRPADD YISAFVREVN RGRVIRIGTV MVPARNQSGQ FKLTARTTLE 
AAARAMVEQG VTEAQVTDKA GHQIGTIDLS IILSAMVSPA HSVQPALAAE