| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2566 |
|---|
| Symbol | trpD |
|---|
| ID | 7386582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2121017 |
|---|
| End bp | 2122039 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643651661 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_002549849 |
|---|
| Protein GI | 222148892 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.258104 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGGC TGAAGCCATT CATCGCAAAG GTCGCCAGCG GGCAAGCACT GACACGGGAT
GAGGCGGCGG ACGCCTTCAA CATCCTGATG TCGGGAGAGG CAACGCCTGC CCAGATTGGC
GGCTTCCTGA TTGCCCTGCG CATGCGCGGT GAAACCGTGC CGGAGATTGT TGGCGCCGTT
ACCGTCATGC GCCAAAAGAT GCTGCCGGTC ATCGCACCCA CAGATTCCAT CGACATCGTC
GGAACGGGCG GAGATGGAAC CGGCACCTAT AATATCTCGA CGCTGGCCGC CCTGATTGTT
GCAGGTGCCG GTGTTCCGGT CGCCAAGCAC GGCAACAAGG CGCTGAGTTC AAAATCCGGT
GCGGCTGATA GTCTGACTGC CCTCGGCGTC AAGTTGGATA TCGATCCATC CGTCATAGGC
CGCTGCATAT CGGAGGCTGG CGTCGGCTTC ATGTTTGCGC AGCTGCATCA CTCTGCCATG
CGCCATGTCG GCCCGGCGAG AGTGGAGCTT GGCACCCGCA CCATTTTCAA CCTTCTGGGA
CCGCTCGCCA ATCCGGCTGG CGTTAAAAAA CAGTTGCTCG GAGTCTATGC GCCTGAATGG
GTGATACCGC TGGCCGAGAC CCTGCGTGAC CTGGGCAGTG AGAGCATCTG GGTTGTGCAT
GGCAATGGCC TTGATGAAAT CACCACGACC GGAACGACGC AGGTGGCGGC GCTCGAACAG
GGCAAGATCC GTAGCTTTGA GCTGACGCCC GGTGATTTTG GCGTGGCACA GGTTGAGCTA
GCCGCCCTGA AGGGTGGCGA CGGCGAATAT AATGCCAAGG CCTTGCGCGC TGTTCTTGAA
GGTGAGAAAA ATGCCTATCG CGACGTGGCG CTCTGCAATG CCGCCGCGGC CCTGGTCATT
GCCGGAAAAG CCAACACACT GGCAGACGGC ATGGCGCTCG GCGCGCAATC GCTGGACAGC
GGCGCTGCCC TGAAACGGCT GGAGACATTG ATTACCGTCT CCAATGGAGG ACATTCGGCA
TGA
|
|---|
| Protein sequence | MNGLKPFIAK VASGQALTRD EAADAFNILM SGEATPAQIG GFLIALRMRG ETVPEIVGAV
TVMRQKMLPV IAPTDSIDIV GTGGDGTGTY NISTLAALIV AGAGVPVAKH GNKALSSKSG
AADSLTALGV KLDIDPSVIG RCISEAGVGF MFAQLHHSAM RHVGPARVEL GTRTIFNLLG
PLANPAGVKK QLLGVYAPEW VIPLAETLRD LGSESIWVVH GNGLDEITTT GTTQVAALEQ
GKIRSFELTP GDFGVAQVEL AALKGGDGEY NAKALRAVLE GEKNAYRDVA LCNAAAALVI
AGKANTLADG MALGAQSLDS GAALKRLETL ITVSNGGHSA
|
|---|
| |