| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2557 |
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| Symbol | alaS |
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| ID | 7385911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2107107 |
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| End bp | 2109770 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651653 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_002549841 |
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| Protein GI | 222148884 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.243689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGGCG TAAATGACAT TCGGTCGACC TTCCTCGATT ACTTCAAGAC CAATGGTCAT
GAAGTCGTTG CGTCGAGCCC GCTCGTGCCC CGCAATGACC CGACGTTGAT GTTCACCAAC
GCCGGCATGG TGCAATTCAA GAATGTCTTC ACCGGACTGG AACACCGGCC TTATTCCCGT
GCGACCACAG CGCAAAAATG CGTTCGGGCC GGGGGCAAGC ATAACGATCT TGACAATGTC
GGTTACACGG CGCGCCATCA CACGTTTTTC GAAATGCTGG GCAATTTTTC CTTCGGCGAT
TATTTCAAGG AAAATGCCAT CGAATTGGCC TGGAACCTGA TTACCCGGGA ATTCGGTATT
GATCGTGACA AGCTTTGCGT CACCGTCTAT CACACCGATG ACGAAGCCTT TGGCTTGTGG
AAGAAAATTG CAGGCCTGCC GGAAGAGAAG ATAATCCGGA TTGGCACCAG CGACAATTTC
TGGGCAATGG GTGATACCGG TCCCTGCGGT CCGTGCTCCG AAATTTTTTA TGACCACGGC
GACCATATCT GGGGCGGACC TCCAGGTTCC GCCGATGAGG ATGGCGACCG GTTCATCGAG
ATCTGGAACC TGGTTTTCAT GCAATATGAA CAGGTGACCA AGGAACAACG GGTTGACCTG
CCGCGTCCAT CCATCGATAC GGGCATGGGC CTGGAGCGGG TTGCCGCCCT GTTGCAGGGC
AAGCACGACA ATTACGATAT CGACCTGTTC CGCGCGCTGA TCGATGCTTC CGTTGATCTC
ACCGGTGTTC CGGCTGAGGG CGAGCGCCGG GCCAGCCACC GGGTGATCGC CGATCATCTG
CGGTCTTCTG CGTTCCTGAT TGCAGACGGT GTGTTGCCAT CGAACGAAGG CCGCGGCTAT
GTTCTGCGCC GGATCATGCG CCGCGCCATG CGACATGCGG AACTGCTCGG TTCCCGCGAT
CCGATGATTT ACAAGCTTCT GCCTGTGCTT GTGCAGCAGA TGGGGCGCGC CTACCCGGAA
CTGGTCCGCG CCGAGGCGTT GATTTCCGAA ACCTTGAAGC TCGAGGAAAA CCGTTTCCGC
AAGACGTTGG AGCGTGGCCT TTCGCTGCTG TCCGACGCCA CGGCCACTCT GAACAAGGGC
GATAGCATTG ACGGCGAGAC CGCGTTCAAG CTTTACGACA CCTACGGTTT TCCCCTGGAT
CTGACGCAGG ATGCCTTGCG CGCCCGTGGC ATTGGCGTCG ATATCACCGG CTTTAACGAT
GCTATGCAGC GTCAGAAGGC CGAAGCCCGT GCCAGTTGGT CGGGCTCCGG CGACAAGGCG
ATGGAAACTG TCTGGTTCGA GTTGAAGGAC AAGCACGGCG CAACCGAGTT TCTCGGTTAT
TCCGCCGAAA GCGCCGAGGG CGAAATTCAG GCGCTGGTGC GTGATGGTGC GGTGATCGAG
CAAGCTACGG CGGGCGAGAA TGTTCAGGTC GTGGTCAACC AGACACCGTT CTATGGCGAA
TCTGGTGGCC AGGTTGGCGA TACAGGTGAG ATCGTTGGCG ATGGGTTCGT TCTTGAGGTG
CGCGATACCT TGAAGAAGGG CGAGGGGCTG TTTGTCCACG TTGCCACTGT TCGTGAAGGG
ACTGTTCGCG CCGGTACGGT CGTCGCGCTC AATGTTGATC ATGCTCGTCG CTCCAGGCTA
CGGGCCAACC ACTCCGCGAC ACATCTGCTG CATGAGGCGT TGCGCGATGT GCTGGGCAGC
CATGTGGCAC AGAAGGGCTC GCTGGTTGCG CCGGAGCGTC TTCGCTTCGA TATTTCTCAT
CCAAAGCCTG TGACGGCGGA GGAGTTGAAG ATCGTAGAAG ACATGGCCAA TGAAATTATT
GTCCAGAATG CTGCTGTCAC CACCCGCTTG ATGGCGGTGG ATGATGCGAT TGCCGAGGGT
GCCATGGCGC TGTTTGGCGA GAAGTATGGC GATGAAGTGC GTGTCGTGTC GATGGGGACG
GTGGTGCGCG GTCCCAAGGC GGGCAGGCCC TATTCCATTG AGCTTTGCGG TGGAACGCAT
GTCTCGGCGA CAGGCGATAT CGGCTTGGTG CGTCTGGTGG CGGAAAGCGC TGTTGGTGCA
GGCGTCCGCC GGATCGAGGC ACTGACTGGC GAATCCGCCC GTGCCTATCT GGCCGAACAG
GATGAGCGTG TCAAAGCGCT GGCATCCGCC TTGAAGGTCC AACCCGTCGA TGTCGTTTCT
CGCGTCGAAG CTTTGGTGGA CGAGCGCCGC AAGCTGGAAC GCGAATTGGC TGATGCCAAG
CGGAAGCTTG CGATGGGCGG CGGTTCAACC GGCGCTGCCG ACGTGCCGCG CGAGTTAGGT
GGGATCAAGT TCATCGGCAA GCAACTCGCT GGGATTGATC CTAAGGATCT CAAGGGCATG
GCCGACGAGG CCAAATCTGT ACTCGGGTCT GGCGTTGTCC TGCTGATCGC AGTTGCTGAG
GATGGCAAAG CCAGTGCTGT CGCGAGTGTG ACGGGTGATC TGACCAGCAA GGTTTCCGCC
GTCGATTTGG TCCGTATTGC CTCGTCCGCC CTTGGTGGTA AGGGTGGCGG TGGACGGCCT
GATATGGCCC AGGCAGGTGG CCCTGATGGT GCCAAGGCCG ACGATGCCAT CGAAGCCGTT
GCCAAGGCCA TTGAGGCGGC CTAA
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| Protein sequence | MSGVNDIRST FLDYFKTNGH EVVASSPLVP RNDPTLMFTN AGMVQFKNVF TGLEHRPYSR
ATTAQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKENAIELA WNLITREFGI
DRDKLCVTVY HTDDEAFGLW KKIAGLPEEK IIRIGTSDNF WAMGDTGPCG PCSEIFYDHG
DHIWGGPPGS ADEDGDRFIE IWNLVFMQYE QVTKEQRVDL PRPSIDTGMG LERVAALLQG
KHDNYDIDLF RALIDASVDL TGVPAEGERR ASHRVIADHL RSSAFLIADG VLPSNEGRGY
VLRRIMRRAM RHAELLGSRD PMIYKLLPVL VQQMGRAYPE LVRAEALISE TLKLEENRFR
KTLERGLSLL SDATATLNKG DSIDGETAFK LYDTYGFPLD LTQDALRARG IGVDITGFND
AMQRQKAEAR ASWSGSGDKA METVWFELKD KHGATEFLGY SAESAEGEIQ ALVRDGAVIE
QATAGENVQV VVNQTPFYGE SGGQVGDTGE IVGDGFVLEV RDTLKKGEGL FVHVATVREG
TVRAGTVVAL NVDHARRSRL RANHSATHLL HEALRDVLGS HVAQKGSLVA PERLRFDISH
PKPVTAEELK IVEDMANEII VQNAAVTTRL MAVDDAIAEG AMALFGEKYG DEVRVVSMGT
VVRGPKAGRP YSIELCGGTH VSATGDIGLV RLVAESAVGA GVRRIEALTG ESARAYLAEQ
DERVKALASA LKVQPVDVVS RVEALVDERR KLERELADAK RKLAMGGGST GAADVPRELG
GIKFIGKQLA GIDPKDLKGM ADEAKSVLGS GVVLLIAVAE DGKASAVASV TGDLTSKVSA
VDLVRIASSA LGGKGGGGRP DMAQAGGPDG AKADDAIEAV AKAIEAA
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