| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2553 |
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| Symbol | |
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| ID | 7385908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2103316 |
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| End bp | 2104503 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651651 |
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| Product | ABC transporter membrane spanning protein (amino acid) |
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| Protein accession | YP_002549839 |
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| Protein GI | 222148882 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.186607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAGAT GGCGCTGGTC GAGAGGTAAT ATCATGGCAT TACACACCCC TGTATTCGTA
CGCACGGAGA TGGTGTCCGC CTCTCCGGCC CCCGCTGGCC AGATCGGCAC GACGGCCTGG
GTCCGCAAGA ATCTGATTGC GACCCCGAAA GACGTTGTGC TGACCCTGCT GGCATTGGCC
TTTCTGGCCT ATGTCCTGCC GGGCCTGATC AACTGGCTGT TCGTCCACGC TGTCTGGTCG
GGGGCAGGCC GCATCGCCTG CCTTACCGTC TCTCAGGGCG GGGCCTTGCC CGATGGCAGC
GCTGGGGCCT GCTGGGCCTT TGTCGGCGCC AAATTCCAGC AATTCATCTT CGGGCGCTAT
CCGAGCGAAG AGATCTGGCG GCCGTTGACC GTCATGGTCC TGTTCGCCGT CCTGCTGGCA
CCCATGCTGA TCCCGAAGGC GCCGTTCAAG GGCACCAATG CCTTACTGCT GTTTCTGGTG
CTGCCGGTGG TTTCCTTCTT TTTGCTCACC GGCGGCTTTG GCCTCGAGCA TGTGGAAACG
GCCCGCTGGG GCGGCCTGAT GGTGACCCTG ATCCTGTCCT TCTTTGGGAT CGCGGTTTCG
CTGCCGGTTG GCATCATGTT GGCGCTTGGC CGCCGGTCGA CCATGCCGGT CATCAAGATG
CTCTGCGTGA TCTTCATCGA AGTGGTGCGC GGCGTCCCCT TGATCACCGT ACTGTTCATG
GCCAGCGTCA TGCTACCGTT ATTCCTTCCC GATGGCTGGA GTTTCGATAA ATTGCTGCGC
GCTTTGGTCG GTGTCTCGAT CTTCTCATCG GCTTATATGG CTGAAGTCAT TCGCGGCGGC
CTGCAGGCGA TTCCCAAGGG ACAGTTCGAA GGTGCCGATT CGCTTGGCCT GAGCTACTGG
CAGAAAATCC GGCTGATCGT CCTGCCGCAG GCGATCAAGC TGGTCATTCC GGGTATCGTC
AATACCTTTA TCGGGCTGTT CAAGGATACG TCGCTGGTCT CGATCATTGG CATGTTCGAC
CTCCTGGGTA TCGTCATCCT CAACCTGTCG GACTCCAACT GGGCAACGCC TGAGACAGCC
GTAACCGGTC TGGTGTTTGC AGGCTTCATC TACTGGCTGT TCTGCTTCAG CATGTCGCGC
TACTCGTATT TCATGGAACG GCACCTCGAC ACGGGCCACA AGCACTAG
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| Protein sequence | MPRWRWSRGN IMALHTPVFV RTEMVSASPA PAGQIGTTAW VRKNLIATPK DVVLTLLALA
FLAYVLPGLI NWLFVHAVWS GAGRIACLTV SQGGALPDGS AGACWAFVGA KFQQFIFGRY
PSEEIWRPLT VMVLFAVLLA PMLIPKAPFK GTNALLLFLV LPVVSFFLLT GGFGLEHVET
ARWGGLMVTL ILSFFGIAVS LPVGIMLALG RRSTMPVIKM LCVIFIEVVR GVPLITVLFM
ASVMLPLFLP DGWSFDKLLR ALVGVSIFSS AYMAEVIRGG LQAIPKGQFE GADSLGLSYW
QKIRLIVLPQ AIKLVIPGIV NTFIGLFKDT SLVSIIGMFD LLGIVILNLS DSNWATPETA
VTGLVFAGFI YWLFCFSMSR YSYFMERHLD TGHKH
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