| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2552 |
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| Symbol | |
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| ID | 7385907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2102148 |
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| End bp | 2103344 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643651650 |
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| Product | ABC transporter membrane spanning protein (amino acid) |
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| Protein accession | YP_002549838 |
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| Protein GI | 222148881 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.548914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATAC AGGATTCGAG CTCCTCTAAA ACCGGATCGG TCAGCGCGGC ATCGCTCATC
TACGACCCGA AGGTCCGTGG CATATTTTAT CAGGTGGTTA CCTTAGTAAT TTTGGTCGCC
TTCATTTGGA TGGTCGCCAA CAATACCATT CACAATCTCC AAAAAGCCAA TATCACCTCC
GGCTTCGGCT TCCTGCAAGG CCGCTCCGGT TTCGACATCG GCCAGCAATT GATCAGCTAC
AGCAGCGATT CGACCTATGG TCGCGCACTT CTCGTTGGCC TGCTCAATAC GCTGCAAGTC
GCCGCGGCCG GCATCATCAC CGCCTCGATC ATCGGCTTTG CCGTCGGTCT CGGCCGATTG
TCGCACAACT GGTTGATCGC CAAGCTCTGC CAGGTCTATG TCGAAATTTT CCGCAATATT
CCGCCGCTGC TGGTCATCTT CTTCTGGTAC CGCGGTGTCA TCGCCATTCT GCCGCAGGCG
CGCGATTCCA TCGCGCTGCC TTTCGATATC TATCTGAACA ATCGCGGCAT CACCTTTCCA
AAGGCGATTT TCGGCGACGA GGCCTGGCTG CTGTTGCCAG CCATCGCGAT AGGCATCGTT
CTTTCCATTC TCCTCAGGAA ATGGGCCCGC AAGCGCCAGA TGGCGACAGG CCAACAATTT
CCAATCCTAT GGTCGTCGCT GGCGCTGATC CTCGGCCTTC CAGTCCTGGT GTTTATGGCG
ATTGGCATGC CGCTGACCTT CGATCTTCCA ATTGTCGGCC GGTTCAACAT GCAGGGCGGT
TCGGTCGTCG GACCCGAGTT CACCTCTCTG TTTCTGGCGC TGTCCTTCTA CACCGCCGCT
TTCATAGCGG AAATCGTTCG CGGTGGCATC AAGGCTGTGT CCAAGGGGCA GACAGAAGCG
GCCAGCGCGC TCGGCCTCAA GCATAACCAC ACCTCACGGC TCATTGTCGT GCCGCAGGCA
ATGCGGATTA TCATTCCGCC GCTGACCAGC CAGTATCTCA ACCTTGCGAA AAACTCATCC
CTGGCTGTTG CCATCGGCTT TGCCGATATC GTCGCTGTCG GTGGTACGAT TCTCAATCAG
ACCGGACAGG CCGTCGAAAT CGTTGCCGTC TGGCTGGCCG TCTACCTGAC GATCAGCATC
AGCACTGCGG TCTTCATGAA CTGGTTTAAT GCCAAGATGG CGCTGGTCGA GAGGTAA
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| Protein sequence | MAIQDSSSSK TGSVSAASLI YDPKVRGIFY QVVTLVILVA FIWMVANNTI HNLQKANITS
GFGFLQGRSG FDIGQQLISY SSDSTYGRAL LVGLLNTLQV AAAGIITASI IGFAVGLGRL
SHNWLIAKLC QVYVEIFRNI PPLLVIFFWY RGVIAILPQA RDSIALPFDI YLNNRGITFP
KAIFGDEAWL LLPAIAIGIV LSILLRKWAR KRQMATGQQF PILWSSLALI LGLPVLVFMA
IGMPLTFDLP IVGRFNMQGG SVVGPEFTSL FLALSFYTAA FIAEIVRGGI KAVSKGQTEA
ASALGLKHNH TSRLIVVPQA MRIIIPPLTS QYLNLAKNSS LAVAIGFADI VAVGGTILNQ
TGQAVEIVAV WLAVYLTISI STAVFMNWFN AKMALVER
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