| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2551 |
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| Symbol | |
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| ID | 7385906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2100990 |
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| End bp | 2102015 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651649 |
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| Product | ABC transporter substrate binding protein (amino acid) |
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| Protein accession | YP_002549837 |
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| Protein GI | 222148880 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA CGCTCCTGTC AGTTGCGCTT GGCGCTGCGG CATTTGGTTT TGGCGCATCG
GCAGCCTCGG CCGACACGCT GAGCGATGTT AAGGCAAAAG GCTTTGTTCA ATGCGGCGTC
AGCCAGGGCA TTCCCGGATT TTCCGCTCCG AATGACAAGG GCGACTGGTC GGGTCTGGAT
GTCGATTACT GCCGCGGCAT TGCTGCCGCC GTCTTCGGCG ACGCCTCCAA GGCCAAGTTC
ACGCCCGTAT CCGCTAAAGA TCGCTTCCCT GCGTTGCAGT CCGGCGAAAT CGACGTCCTC
ACGCGTAACA CGACCTGGAC GATCAGCCGC GACACCTCGC TCGGCTTCAA CTTCCGCACC
GTCAACTACT ATGACGGCCA GGGCTTCATG GCTAAAAAGA GCCTCAACGT GAAATCGGCT
CTGGAACTGT CCGGCGCTGC CGTCTGCGTT CAGACCGGCA CCACGACCGA ACTGAACCTT
GCCGACTATT TCAAGGCCAA TGGCCTGAAA TACAACCCCG TCGTATTCGA AAAGGAAGAC
GACGCAACTG CGGCTTACGA CGCCGGTCGT TGTGACGTCT ACACCACCGA CCAATCCGGC
CTCTATGCGA TCCGCCTGAA GCTCAAGAAC CCCGATGACA ACGTGGTTCT GCCGGAAGTT
ATTTCCAAGG AGCCACTCGG GCCGGCCGTA CGCCAAGGTG ACGATAAGTG GTTCGACGTG
GTCAGCTGGG TTCACTATGC CATGGTGAAC GCCGAAGAAG CCGGTGTTAC CTCCAAGAAC
ATCGACGACT TGAAGGCAAA CGGTGGCCCA GACATAAAGC GTATGCTCGG TGCTGAAGCC
GGCAGCAAGC TGGGCACCGA TCTTGGCCTG AAAGAAGACT GGGCTTACAA TGTCATCAAG
TTGGTCGGCA ATTACGGCGA AGTTTTTGAT CGTAATGTCG GCGTCGGGAG CCCTTTGAAG
ATTGCACGCG GCGTCAACGC GTTGTGGTCT AAGGGCGGCC TGCAGTACGG CCCGCCGATC
CGCTGA
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| Protein sequence | MKKTLLSVAL GAAAFGFGAS AASADTLSDV KAKGFVQCGV SQGIPGFSAP NDKGDWSGLD
VDYCRGIAAA VFGDASKAKF TPVSAKDRFP ALQSGEIDVL TRNTTWTISR DTSLGFNFRT
VNYYDGQGFM AKKSLNVKSA LELSGAAVCV QTGTTTELNL ADYFKANGLK YNPVVFEKED
DATAAYDAGR CDVYTTDQSG LYAIRLKLKN PDDNVVLPEV ISKEPLGPAV RQGDDKWFDV
VSWVHYAMVN AEEAGVTSKN IDDLKANGGP DIKRMLGAEA GSKLGTDLGL KEDWAYNVIK
LVGNYGEVFD RNVGVGSPLK IARGVNALWS KGGLQYGPPI R
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