Gene Avi_2534 details

Gene Information

• Locus tag: Avi_2534
• ID: 7385893
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2088844
• End bp: 2089269
• Gene Length: 426 bp
• Protein Length: 141 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643651636
• Product: HIT family protein
• Protein accession: YP_002549824
• Protein GI: 222148867
• COG category: [F] Nucleotide transport and metabolism; [G] Carbohydrate transport and metabolism; [R] General function prediction only
• COG ID: [COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.91947
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAATT CGGCCTATGA TCCAGACAAT ATTTTCGCCA AGATCCTCAA GGGCGACATC 
CCCTCGATCA AGGTCTACGA GGATGACGAC GCGCTGGCCT TCATGGATGT GATGCCGCAA 
GCGCCGGGTC ATTGCCTGGT GATTCCAAAG CAGGGATCGC GCAATCTGCT GGATGCCGAT 
CCGGCTGTGC TGGCAAAACT CATCCCGGTC GTGCAGACAT TGGCCGTTGC AGTCAAACAG 
GCCTTCGATG CCGACGGTGT CTATGTTGCG CAATTCAACG AGCCTGCCGC GGGCCAGACC 
GTGTTTCATC TGCATTTCCA CGTCATTCCC CGCCATGATG GGCAACCGTT GAAGCCGCAT 
GTGGGTGGCA TGGAGAATAT CGACGTGTTG AAGGCCAATG CCGCAAAGAT TATCGCAGCG 
CTATAG 

 

Protein sequence

MTNSAYDPDN IFAKILKGDI PSIKVYEDDD ALAFMDVMPQ APGHCLVIPK QGSRNLLDAD 
PAVLAKLIPV VQTLAVAVKQ AFDADGVYVA QFNEPAAGQT VFHLHFHVIP RHDGQPLKPH 
VGGMENIDVL KANAAKIIAA L