Gene Avi_2520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2520 
SymboluppS 
ID7385884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2080772 
End bp2081518 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content58% 
IMG OID643651627 
Productundecaprenyl pyrophosphate synthase 
Protein accessionYP_002549815 
Protein GI222148858 
COG category[I] Lipid transport and metabolism 
COG ID[COG0020] Undecaprenyl pyrophosphate synthase 
TIGRFAM ID[TIGR00055] undecaprenyl diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.333715 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACTT TGGATATTTC CGCCGTTCCC GAGCACGTTG CCATCATTAT GGATGGCAAC 
GGACGCTGGG CCAATCAGCG TGGCATGCCG CGCGCTTATG GCCATCGGCA GGGAATGGAA
GCCTTGCAGA CAGTGGTTCG CACGGCAGGC GAAGTCGGCG TGCGCTATCT GACCCTGTTT
GCGTTTTCAT CGGAAAACTG GCGCAGGCCG GAAACCGAGA TCACTGACCT GTTCGGTTTG
CTCAAGACCT TCGTGCGCCG CGACCTTGCC GAGCTTCGTG CCAATAACGT ACGGGTACGG
ATCATCGGTG AGCGCAGCAC GCTGAAGAGC GATATTCTCA AGCTGCTGAT CGAAGCAGAG
GAGACCACCC GCACCAATAC CGGCATGACT ATGGTGATTG CCTTCAATTA TGGTGCGCGC
GATGAGATGA CCAGGGCAGT TTCAGCCCTG GTGCGCGATG TGCAGGCAGG ACTTTTACCT
GCCAGCGCCA TTACACAGGA GGCGATTTCC GCCAGATTGG ATACGGCGGG AATACCTGAT
CCGGATCTGA TCATCCGCAC CAGCGGCGAG GAACGCCTGT CGAATTTCCT GCTCTGGCAG
GCCGCCTATT CCGAATTGAT CTTCGTGCCG GAATATTGGC CCGATTTTAG CCGCGAGAGC
TTTCTGGCGA CCTTGGAACT CTATGCCTCC CGCAGTCGGC GATTCGGCGG TCTGGCACCA
GCCGCCGCCG TTGTTGCCGG ATCGTAG
 
Protein sequence
MTTLDISAVP EHVAIIMDGN GRWANQRGMP RAYGHRQGME ALQTVVRTAG EVGVRYLTLF 
AFSSENWRRP ETEITDLFGL LKTFVRRDLA ELRANNVRVR IIGERSTLKS DILKLLIEAE
ETTRTNTGMT MVIAFNYGAR DEMTRAVSAL VRDVQAGLLP ASAITQEAIS ARLDTAGIPD
PDLIIRTSGE ERLSNFLLWQ AAYSELIFVP EYWPDFSRES FLATLELYAS RSRRFGGLAP
AAAVVAGS