Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2520 |
Symbol | uppS |
ID | 7385884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 2080772 |
End bp | 2081518 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651627 |
Product | undecaprenyl pyrophosphate synthase |
Protein accession | YP_002549815 |
Protein GI | 222148858 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.333715 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACTT TGGATATTTC CGCCGTTCCC GAGCACGTTG CCATCATTAT GGATGGCAAC GGACGCTGGG CCAATCAGCG TGGCATGCCG CGCGCTTATG GCCATCGGCA GGGAATGGAA GCCTTGCAGA CAGTGGTTCG CACGGCAGGC GAAGTCGGCG TGCGCTATCT GACCCTGTTT GCGTTTTCAT CGGAAAACTG GCGCAGGCCG GAAACCGAGA TCACTGACCT GTTCGGTTTG CTCAAGACCT TCGTGCGCCG CGACCTTGCC GAGCTTCGTG CCAATAACGT ACGGGTACGG ATCATCGGTG AGCGCAGCAC GCTGAAGAGC GATATTCTCA AGCTGCTGAT CGAAGCAGAG GAGACCACCC GCACCAATAC CGGCATGACT ATGGTGATTG CCTTCAATTA TGGTGCGCGC GATGAGATGA CCAGGGCAGT TTCAGCCCTG GTGCGCGATG TGCAGGCAGG ACTTTTACCT GCCAGCGCCA TTACACAGGA GGCGATTTCC GCCAGATTGG ATACGGCGGG AATACCTGAT CCGGATCTGA TCATCCGCAC CAGCGGCGAG GAACGCCTGT CGAATTTCCT GCTCTGGCAG GCCGCCTATT CCGAATTGAT CTTCGTGCCG GAATATTGGC CCGATTTTAG CCGCGAGAGC TTTCTGGCGA CCTTGGAACT CTATGCCTCC CGCAGTCGGC GATTCGGCGG TCTGGCACCA GCCGCCGCCG TTGTTGCCGG ATCGTAG
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Protein sequence | MTTLDISAVP EHVAIIMDGN GRWANQRGMP RAYGHRQGME ALQTVVRTAG EVGVRYLTLF AFSSENWRRP ETEITDLFGL LKTFVRRDLA ELRANNVRVR IIGERSTLKS DILKLLIEAE ETTRTNTGMT MVIAFNYGAR DEMTRAVSAL VRDVQAGLLP ASAITQEAIS ARLDTAGIPD PDLIIRTSGE ERLSNFLLWQ AAYSELIFVP EYWPDFSRES FLATLELYAS RSRRFGGLAP AAAVVAGS
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