| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2519 |
|---|
| Symbol | cdsA |
|---|
| ID | 7385883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2079923 |
|---|
| End bp | 2080765 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651626 |
|---|
| Product | phosphatidate cytidylyltransferase |
|---|
| Protein accession | YP_002549814 |
|---|
| Protein GI | 222148857 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0575] CDP-diglyceride synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGAG AACTCAGGCT CCGTATCTTG TCCTCCATCG TCATGGTCGC GGTGGTACTC
GCCGCCACCT GGACCGGTGG CCTGCCTTTC CGGGGGCTCG CCGCTGTGAT CGGCCTCGCC
GTGTTCTGGG AATGGTCGAC GATGACCCGG CTCGACGAAG TCAGTATCCG TGGCCTTGCC
ATTGGCTGGC TTTCGGTTGC TGTCATTGCC GGCAATGTTG TGGCGGGTGA TACCTCTTTG
AGCCTACCCT TGCTGTCCGG CTTCACTTTG ACGCTTGTTT TTCTTACATT TTTGCGTCGC
TGGTCCTGGT GGCTTGCCGG TGGCGTATTT TATGCCGGAG CTTGTATTGT GACTTTGGCT
GCCATTCGCG ATGACGATGC CATCGGCTTT GTCGCCATGC TTTTTGTCTT CGTCATTGTC
TGGAGCACGG ATATTTTCGC CTATTTCGTT GGACGCACGC TCGGTGGCCC GAAGCTGGCG
CCCCGCATAT CGCCGGGCAA AACCTGGTCC GGTGCCATCG GTGGAACCGT GGCGGCCGTC
ATCGGCGGGT ACGCGGTGAC GGCATCCTAT TTCACGGTCT ATGGCTGGTG GATACCTGCG
TTGGCTCTGG TCCTGTCCAT CTGTAGCCAA ATGGGAGACC TGTTCGAATC CTTCGTCAAG
CGCCGCTGTG GCGCTAAGGA TTCCAGTCAT CTCATTCCCG GTCACGGCGG CGTGATGGAT
CGTGTTGACG GACTGGCGAC CGCAAGCTTC GCGGCATTTC TGATTGCTAT GATCGTTGCT
GCCATCAACA ACGGAGTGAC CGATTCGGTT GGTGGACTGT TGTTCGATTT CGCCGGTCAC
TGA
|
|---|
| Protein sequence | MTRELRLRIL SSIVMVAVVL AATWTGGLPF RGLAAVIGLA VFWEWSTMTR LDEVSIRGLA
IGWLSVAVIA GNVVAGDTSL SLPLLSGFTL TLVFLTFLRR WSWWLAGGVF YAGACIVTLA
AIRDDDAIGF VAMLFVFVIV WSTDIFAYFV GRTLGGPKLA PRISPGKTWS GAIGGTVAAV
IGGYAVTASY FTVYGWWIPA LALVLSICSQ MGDLFESFVK RRCGAKDSSH LIPGHGGVMD
RVDGLATASF AAFLIAMIVA AINNGVTDSV GGLLFDFAGH
|
|---|
| |