Gene Avi_2509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2509 
Symbol 
ID7385874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp2070081 
End bp2070752 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content58% 
IMG OID643651617 
Producthypothetical protein 
Protein accessionYP_002549805 
Protein GI222148848 
COG category[S] Function unknown 
COG ID[COG4291] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTCCA AGAAAAAGCC TCGTTTCTAC GCATTGAGAC GCCATAGGCA CAGCCCGTTC 
TATGCGTCTG GTCTGCTGGG ACTTTTGACG TTGCCGGTCT TTCTGTGGAT CAAGCCCGCC 
TTGGCCGTCG AATGCTCGGC CATCGTGTTT TTCGTCCTCT ATATCGCCTT GATGATAAAA 
CGCATCCCCG GCATCACCGC TGAACGCCTG AAAACCAGCC CGCAACGCGA CGATGCGCCG 
ACCATCGTCA TCCCGCTGGT CAGCCTGCTG GCGGTAGTGG CCGCAGTCGC CGCTCTGTTC 
AACGCCTTGA ACCGGGCCGG TTCTCCCAGC TTGCTGGAAG TGTCGCTAGC GTTTGTGTCG 
GTCATCAGCG GCTGGTTCAC CATTCACACC ATGTTTGCAA TGCATTACGC CCATGATTAT 
TGGCGTCATC TGACAAGCAA TCCCGACCCC GGCCCTTCCG GCGGTCTGGA TTTTCCCGAC 
ACGCCGGAGC CAGGCGGCTA TGAATTCCTG TATTTCGCCT TCGTCATCGG CATGACCGCC 
CAGACATCCG ATGTCGCCAT CACCAGCACG GCCATGCGGC GGCTCAACCT CGCCCATTCC 
ATCGTGTCTT TCTTCTTCAA CACGATTTTG GTCGCGGCAG CCGTCAACGC CGTCGTTTCG 
ATAGCCAATT GA
 
Protein sequence
MTSKKKPRFY ALRRHRHSPF YASGLLGLLT LPVFLWIKPA LAVECSAIVF FVLYIALMIK 
RIPGITAERL KTSPQRDDAP TIVIPLVSLL AVVAAVAALF NALNRAGSPS LLEVSLAFVS 
VISGWFTIHT MFAMHYAHDY WRHLTSNPDP GPSGGLDFPD TPEPGGYEFL YFAFVIGMTA 
QTSDVAITST AMRRLNLAHS IVSFFFNTIL VAAAVNAVVS IAN