| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2492 |
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| Symbol | cpdB |
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| ID | 7385858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2051413 |
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| End bp | 2053416 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643651601 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_002549789 |
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| Protein GI | 222148832 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.190308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCCAC TCGCACACTT GCGCCCCACC GACCTGCACC CTATTACGCG CCGCTCGCTG
TTGGGAGGTT TTGCCGCTGC CAGCGCCCTT GTCGTGCTTC ATCCGTTTGC CGCCAGGGCA
GCAGCCAATC AGGCGCATTT GCGATTGATG GAAACCACCG ACATCCATGT CAACCTGATG
CCCTACGACT ATTATGCCGA CAAGCCCAAT GACACGATGG GCCTGACGCG CACAGCGACG
TTGATCGACG AGATCCGGGC CGAAGCTGGC AACTCCATGT TGATCGACAA TGGCGATTTG
CTGCAAGGCA GCCCGATGGG CGATTACATG GCTTATAAAA AGGGCATCAA GGCCGGTGAT
CAGCACCCCG TCATGAAGGC CATGAACACG CTGGGCTATG ATTGTGGCAC GCTTGGCAAT
CATGAATTCA ATTACGGCCT CGATTTCATG TTCAACACGC TGGCGGCGGC GAAATATCCT
ATTGTCTGCG CCAACCTGAC CAAGGGCCAG CTCGCCTCCG ATCCGAAAAA CGACGCGCTA
TTCTTCAAGC CCTTCACCAT CATCGAAAAG ACCATCAAGG ATGGCGCGGG CACCGAGAGC
GTGATCAAGG TCGGCTTTAT CGGGTTCGTT CCGCCGCAGA TTATGCTCTG GGATGCCAAG
AACCTCGAAG GCAAGGCCCA GACCCGTGAC ATCGTCGAGG CGGCGCGCGC CTGGGTGCCT
GTCATGAAAG AGCAAGGTGC TGATATCGTT ATCGCGCTCT CGCATTCCGG TATTGATGGC
AGTGGCCAGA CGGAGAGAAT GGAAAATGCT TCGCTCTACC TGGCCACAGT TGACGGCATC
GATGCGATTT TCACCGGCCA TCAACATCTG GTCTTTCCCG GTCCAAAAAC CTGGGATGGT
GTCCAGGGTG CCGATCCGCT CAGGGGAACA TTGATGGGCA AGCCCGCGGT CATGGCTGGC
TTCTGGGGTT CACATATGGG CCTGATCGAC TTCATGCTGG AAAAAGACGG CAATCGCTGG
AAAATCGTCG ATTTCACCGC TGAGGCGCGG CCGATCTATC ACCGCGATGA CGCCAAGAAA
ATCATTGCCG ATGTCAGGGA CAATCAGGAC GTTGTGGCGG CCGTAAAGGA CGAACATGAG
GCAACTTTGG CCTATGTGCG CACCCCGGTC GGCAAGACCT CCGCACCGCT TTACTCCTAT
TTTGCGCTGG TGGCCGACGA CCCCTCGGTG CAGATCGTTT CCAATGCCCA GACCTGGTAT
ATCAAGGACA TGCTAAAGGA GACGAAATAC AAGGATTACC CGGTACTGTC AGCCGCAGCG
CCGTTCAAAG CTGGCGGCCG CGGTGGCGCC GATTATTATA CCGATGTTCC CGCAGGCGAT
ATCGCCATCA AGAATGTCTC GGACCTCTAC CTCTATCCAA ATACCGTGCA GGCAGTGCTG
ATAACAGGCG CGCAAGTCAA GAACTGGCTG GAAATGTCGG CTGGCATGTT CAACCAGATC
AAGCCCGGAT CGAAGGATGC GGCCCTGCTC AATTTCGACT TCCCATCCTA CAATTACGAT
GTGATCGACG GCGTCACCTA TGAGATCGAT CTGTCGCAGC CAGCGAAATA TGACAAGGAC
GGCAAAGCGA TCAATCCGGA TGCAAACCGG ATCAAAAACC TGAGCTTTAA CGGCAAGCCT
ATTGATCTTG AGCAGCAATT TGTGGTCGTC ACCAACAATT ACCGCGCTGG CGGCGGCGGA
AAATTCCCTG ATATCGCCTC CGACAAGGTG ATTTTCGTCG GCCCGGATAC CAATCGCGAT
GTCATCGTCC GCTATATCGT CGCGCAGGGT ACCATCAACC CCTCGGCTGA CGGCAATTGG
CGCTTTGCCG CGATCCCCGA CACGACCGCC AGCTTCCAGA CAGGCCCCAA GGGCCGGGCG
TTTGCCACTG AGGTCAAGGG CGCGAAGATC GAGGATGCCG GTGACGGCGC GGACGGTTTT
GCCAATTACC GGCTGATTCT GTAA
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| Protein sequence | MSPLAHLRPT DLHPITRRSL LGGFAAASAL VVLHPFAARA AANQAHLRLM ETTDIHVNLM
PYDYYADKPN DTMGLTRTAT LIDEIRAEAG NSMLIDNGDL LQGSPMGDYM AYKKGIKAGD
QHPVMKAMNT LGYDCGTLGN HEFNYGLDFM FNTLAAAKYP IVCANLTKGQ LASDPKNDAL
FFKPFTIIEK TIKDGAGTES VIKVGFIGFV PPQIMLWDAK NLEGKAQTRD IVEAARAWVP
VMKEQGADIV IALSHSGIDG SGQTERMENA SLYLATVDGI DAIFTGHQHL VFPGPKTWDG
VQGADPLRGT LMGKPAVMAG FWGSHMGLID FMLEKDGNRW KIVDFTAEAR PIYHRDDAKK
IIADVRDNQD VVAAVKDEHE ATLAYVRTPV GKTSAPLYSY FALVADDPSV QIVSNAQTWY
IKDMLKETKY KDYPVLSAAA PFKAGGRGGA DYYTDVPAGD IAIKNVSDLY LYPNTVQAVL
ITGAQVKNWL EMSAGMFNQI KPGSKDAALL NFDFPSYNYD VIDGVTYEID LSQPAKYDKD
GKAINPDANR IKNLSFNGKP IDLEQQFVVV TNNYRAGGGG KFPDIASDKV IFVGPDTNRD
VIVRYIVAQG TINPSADGNW RFAAIPDTTA SFQTGPKGRA FATEVKGAKI EDAGDGADGF
ANYRLIL
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