| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2463 |
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| Symbol | cckA |
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| ID | 7385836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2025032 |
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| End bp | 2027650 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651578 |
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| Product | two component sensor kinase |
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| Protein accession | YP_002549767 |
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| Protein GI | 222148810 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.899501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAACC AGCAGCAGAC AGACGAAAGC GTAGGCCCGC TGGTGGATCG CAGGCCGAGT
AGCGGGGCCG CGTTTCGCAT CGTCATCCTG GCCTTTGTTC TGCTGGCTGC CGCCGCCGCC
TTCGTGGTCT TCAAAAACTC GCTGGATAAC CAGATCGTGC TGGGGGTGCT CGGCGTCCTG
GCCATTGTTG GCATTTTCTT TCTGGTCTCG GCGATTATCG GGTTTATCGA AGTCATGCCG
CAGACTCCGT CCGACGGTCT TGGCCGCGCC TTCCTCGACA GCCAGAGTGA GGGAACGCTG
GTCACCGATC CGCGTGGGCA CATTATCTAT GCCAATGCCG CCTATGGCCG GATGACCGGC
GTACGCAGGG CAACAGACGT ACAGACGCTG GAAGCGCTGT TGTCGCGCCA TCGCGAGGCT
GGTGAAGCAC TTTACCGGCT GATCAACGGC TTGCGCGAGG ACCGGGACGG GCAGGAGGAG
TTTCGGCTGC TGAAGCCGCT CGGACCGTTT TCAGACAATG GTTCCGGCGC GCATTGGTAC
CGGTTGCGGG CTCGCCGTCT GGTGGAAAAG GGGCCGCATA AAGGCCTTCA GATCTGGCAG
ATTGCCGACA TTACGGCCGA CCGTGACGAC CAAGAGCGGT TTTTCAAGGA ATTACAGAAC
GCGATCGATT ACCTCGATCA TGCGCCAGCT GGCTTCTTTT CGGCTGGCCG CAAGGGCGAG
ATCTTCTATC TCAATGCCAC CCTGTCGGAA TGGCTCGGCA TTGATCTCAC GCAATTTTCG
CCAGGCGCCA TCTACCTTAA GGACCTGGTT GCGGGCGAGG GCATGGCGCT GATCCAGTCG
GTACAGGCCG AACCAGGCCT GTCGAAGACC GCGACTCTCG ATCTCGACCT GCGCCGGGCT
GATGGCCGCA GTTTTCCGGC TCGCCTTGTC CATAGGGTTC GCTCGGCCCG CGATGGCGCG
CCGGGGGAGA GCCGGACGAT CGTGCTGGCC CGTCAGGAAG TCATTGCTGG TGACCGTTCG
GATTCCTCGG CCTCCATGCG CTTTACCCGG TTTTTCAACA ATACGCCGAT GGCAATTGCC
TCGGTGGACG GGCAGGGGCG CATCCTACGC ACCAATGCGC CGTTCCTGAA ATTCTTTTCC
GATGTCGTTT CCCGTGATGA TATCGACCGC AAGATCCGGC TGGATGCCGT CCTGCATGAT
AATGAGCGTC CGGTATTCGC CGAGGCGCTG TCGCAGGCGC GCGACCGGCA GGTGGACATT
GCACCAATTG ATTCGCGCCA TCCGCTGGAT GACATGCGTC ATTTCCGGTT CTACGTGAAC
GCGGTCATCG ACCAGAGTGA CGAGGCGCCG GAAGAGGCGG CCATCGTTTA CGCGGTTGAC
GTCACGGACC AGAAGGCGCT GGAAACCCAG ATGGCCCAGA CGCAGAAGAT GAATGCTGTC
GGCACGCTGG CCGGGGGCAT CGCCCATGAC TTCAACAATG TTCTGACCGC CATTCTTTTG
TCTTCCGACC ATCTGCTGCT TCAGGCGCGA CCTTCGGATT CGAGTTTTGC CGATCTGATG
GAAATCAAGC GCAATGCCAA TCGCGCCGCC GTTCTGGTCC GGCAGTTGCT GGCCTTTTCG
CGCAAACAGA CCATGCGCCC GACGGTGCTG AACCTGACCG ATGTGATCGG TGACCTGCGC
ATGTTGGTCG ACCGGCTGAT CTCAGGCACC AATGTCAAGC TGCATGTGGA TTACGGACGT
GATCTTTGGC CGGTCAAGGC GGATCTTTCT CAATTCGAAC AGGTGCTGAT CAATCTCTGC
GTCAATGCCC GCGATGCCAT GCCGCAAGGC GGCAATATCA CCATCAGCAC CCGCAATGTC
ACCGGTGTCG AAGCGGCCGC CTATAATCAC CGCGGCCTGC CGCATGAGGA TTTCGTGCTG
ATCGAAGTGG CCGACAGGGG CACCGGCATC GCGCCTGAGA TCCTCGACAA GATCTTCGAG
CCCTTCTTTA CCACCAAGGA TGTCGGCAAA GGGACCGGGC TGGGACTTGC CATGGTTTAT
GGCATCGTCA AACAGTCCGG CGGCTATATC TATCTGGAAT CGGAGGTTGG CGAAGGCACG
ACATTCCGGA TTTTCCTGCC GCGCCATATT GTCGAGCCAG TGGTGATCGA TGCGACCCTT
GCACCTGGCG CGCAAGCCCA GCAGGGCAAT GGCCGGGTTC TGGCTGCGTC CGAATCCGAA
AACTCCAAGG AGCCAGACGA CCTGACAGGC AAATCCGCCG TGGTTCTGCT GGTAGAGGAC
GAGGACGCCG TGCGGCGCGG CGGCAAGCGC ATGCTGGAAA CCAGGGGCTA TACGGTCCAC
GAGGCCTGTT CCGGCGTCGA GGCGCTGGAA ATCATGGAGG AACTGGAAGG CAAGGTCGAT
ATTGTCGTTT CCGACGTGGT GATGCCGGAA ATGGATGGCC CGTCGCTGTT GAAGGAATTG
CGCAAGACCT ATCCGGATAT GAAATTCATC TTCGTTTCTG GCTATGCCGA GGATGCATTT
GCGCGAAACC TGCCTGCGGA TGCCAAGTTC GGATTCCTGC CGAAGCCCTT CTCCCTCAAG
CAATTGGCCA TCGCCGTTCG CGAAATGCTG GATGCCTGA
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| Protein sequence | MTNQQQTDES VGPLVDRRPS SGAAFRIVIL AFVLLAAAAA FVVFKNSLDN QIVLGVLGVL
AIVGIFFLVS AIIGFIEVMP QTPSDGLGRA FLDSQSEGTL VTDPRGHIIY ANAAYGRMTG
VRRATDVQTL EALLSRHREA GEALYRLING LREDRDGQEE FRLLKPLGPF SDNGSGAHWY
RLRARRLVEK GPHKGLQIWQ IADITADRDD QERFFKELQN AIDYLDHAPA GFFSAGRKGE
IFYLNATLSE WLGIDLTQFS PGAIYLKDLV AGEGMALIQS VQAEPGLSKT ATLDLDLRRA
DGRSFPARLV HRVRSARDGA PGESRTIVLA RQEVIAGDRS DSSASMRFTR FFNNTPMAIA
SVDGQGRILR TNAPFLKFFS DVVSRDDIDR KIRLDAVLHD NERPVFAEAL SQARDRQVDI
APIDSRHPLD DMRHFRFYVN AVIDQSDEAP EEAAIVYAVD VTDQKALETQ MAQTQKMNAV
GTLAGGIAHD FNNVLTAILL SSDHLLLQAR PSDSSFADLM EIKRNANRAA VLVRQLLAFS
RKQTMRPTVL NLTDVIGDLR MLVDRLISGT NVKLHVDYGR DLWPVKADLS QFEQVLINLC
VNARDAMPQG GNITISTRNV TGVEAAAYNH RGLPHEDFVL IEVADRGTGI APEILDKIFE
PFFTTKDVGK GTGLGLAMVY GIVKQSGGYI YLESEVGEGT TFRIFLPRHI VEPVVIDATL
APGAQAQQGN GRVLAASESE NSKEPDDLTG KSAVVLLVED EDAVRRGGKR MLETRGYTVH
EACSGVEALE IMEELEGKVD IVVSDVVMPE MDGPSLLKEL RKTYPDMKFI FVSGYAEDAF
ARNLPADAKF GFLPKPFSLK QLAIAVREML DA
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