Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2460 |
Symbol | |
ID | 7386994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2023173 |
End bp | 2023868 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643651576 |
Product | transcriptional regulator TetR family |
Protein accession | YP_002549765 |
Protein GI | 222148808 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.337543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCGTCTC TCGTCAAGCC CCAATTGTCC CGGAGCAGAA TTTTGGCATC GGCTGCCTCG AACACATCTT CGCCGAAGGC ACCCAAAATG CGTGCGGATG CCCAGCGAAA CCGGGAGAAA TTGGTCGAGG TGGCAGCCCT CGCCTTTGCC GAAAAAGGCG TTGAAACCTC GCTTGAGGAT ATCGCCCGGC AGGCAGGTGT CGGCATCGGC ACGCTGTACC GCCATTTTCA GACGCGCGAA CATCTCGTTG AGGCGGTTTA CCGGCGCGAA TTGTCAAGCC TGGCAGAAGC AGCGACGGAG CTTGCAACCA CGCTGCCCGC CGATATGGCG CTGGAGGAAT GGATGCGGCG TTTTGTGGGC TATATCGCCA CCAAACGTGG CATGGCCAAT AGTTTGAAAA TTCTTATGAA TTCCAATTCC AGCCTGTTTG CGGAGGGGTC TGGCCTAATC CGCGATGCGG TAGCCCGGCT GATGACAAAG GCGCAGGAAC AGCAGCTTAT CCGCGACGAT ATTGGCGAGG CTGACCTGCT GCACGCTTTG TCCAGTATCT ATTCCATGCC CGACACCCCG GAATGGCGCG ACCGTTCACA TCGGCTGATC GGATTGCTGA TGGATGGATT GCGCCATAAA GGCCATCCAA AAGCTGACGG CGTGGACCGA AACCTGGAAA CTGAAAACAG CTTCCAGGAT CGATAG
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Protein sequence | MSSLVKPQLS RSRILASAAS NTSSPKAPKM RADAQRNREK LVEVAALAFA EKGVETSLED IARQAGVGIG TLYRHFQTRE HLVEAVYRRE LSSLAEAATE LATTLPADMA LEEWMRRFVG YIATKRGMAN SLKILMNSNS SLFAEGSGLI RDAVARLMTK AQEQQLIRDD IGEADLLHAL SSIYSMPDTP EWRDRSHRLI GLLMDGLRHK GHPKADGVDR NLETENSFQD R
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