| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2451 |
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| Symbol | tgt |
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| ID | 7386075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2014818 |
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| End bp | 2015948 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651568 |
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| Product | queuine tRNA-ribosyltransferase |
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| Protein accession | YP_002549757 |
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| Protein GI | 222148800 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
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| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0606971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGAGC AGTTCACGTT TACCCTGAAA GCCACCAGCG GCAAGGCCCG GCTTGGCGAA
ATCACCATGC CGCGCGGCGC GATCCGCACG CCGGCCTTCA TGCCGGTCGG CACGGTCGGC
ACGGTCAAGG CCATGTATCT CGATCAGGTG CGGGAAGGGG GCGCCGATAT CATTCTGGGC
AATACCTACC ACCTGATGCT GCGTCCAGGC GCTGAGCGCG TCGCTAGACT GGGCGGTTTG
CACGAGTTGA TCCGCTGGCC GCAGCCGATC CTGACCGACA GCGGCGGGTT TCAGGTCATG
TCGCTCTCTG GCCTGCGCAA GCTGGATGAG CAGGGCGTCA CCTTCAAGAG CCATATCGAC
GGTTCGCTGC ATCACATGTC GCCGGAAAGA TCCATCGAAA TCCAGGGCCT GCTGGACAGT
GATATCCAGA TGCAATTGGA CGAATGCGTC GCCTTGCCCG CTGAACCGCG TGAGATTGAG
CGGGCCATGG AAATGTCATT GCGCTGGGCG GAGCGTTGCC GCGTTGCCTT TGGCGAACAA
CCCGGCAAGG CAATGTTCGG CATCGTGCAG GGCGGCGATC AGCCGGGCTT ACGCATACGT
TCTGCCGAAG GGCTGAAGCA ATTGGACCTG AAAGGCTATG CCGTCGGCGG GTTGGCGGTC
GGTGAGCCGC AGGAGGTGAT GCTCAGCATG CTTGACATCA CCCTGCCGGT GCTGCCGACA
GAAAAGCCGC GCTACCTGAT GGGCGTCGGC ACGCCGGACG ATATGTTGAA ATCGGTCGCG
CGTGGCATCG ATATGTTCGA TTGCGTCATG CCGACCCGCT CCGGCCGTCA TGGCCTCGCC
TTCACCCGCC GCGGCAAGGT CAATATCCGC AATGCTCGCC ACGCGGAGGA TAAACGCCCC
CTGGACGAAC AATCGTCCTG CCCGGCGGCA CGAGATTACT CGCGTGCCTA TCTGCACCAT
CTGGTGCGTT CCAACGAAGC GCTGGGCGGC ATGCTGTTAT CCTGGAACAA CCTATCCTAT
TATCAGGAAC TGATGCAGGG CATCCGCCAG TCAATCGCCG AAGGCAGGTT TGAAGATTTC
ATGGCCGAGA CCATGGAATG CTGGGCGCGG GGTGATATCG AGGCGGCGTA A
|
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| Protein sequence | MSEQFTFTLK ATSGKARLGE ITMPRGAIRT PAFMPVGTVG TVKAMYLDQV REGGADIILG
NTYHLMLRPG AERVARLGGL HELIRWPQPI LTDSGGFQVM SLSGLRKLDE QGVTFKSHID
GSLHHMSPER SIEIQGLLDS DIQMQLDECV ALPAEPREIE RAMEMSLRWA ERCRVAFGEQ
PGKAMFGIVQ GGDQPGLRIR SAEGLKQLDL KGYAVGGLAV GEPQEVMLSM LDITLPVLPT
EKPRYLMGVG TPDDMLKSVA RGIDMFDCVM PTRSGRHGLA FTRRGKVNIR NARHAEDKRP
LDEQSSCPAA RDYSRAYLHH LVRSNEALGG MLLSWNNLSY YQELMQGIRQ SIAEGRFEDF
MAETMECWAR GDIEAA
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