| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2435 |
|---|
| Symbol | sufB |
|---|
| ID | 7386064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2004700 |
|---|
| End bp | 2006169 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643651557 |
|---|
| Product | cysteine desulfurase activator complex subunit SufB |
|---|
| Protein accession | YP_002549746 |
|---|
| Protein GI | 222148789 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component |
|---|
| TIGRFAM ID | [TIGR01980] FeS assembly protein SufB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.167744 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCG TACAAGAAAC GATCGATCAG GTCCGCCAGA TCGACGTCGA TCAGTACAAG
TATGGTTTTG AAACCATGAT CGAAGTCGAC AAGGCCCCGA AGGGCTTGTC GGAAGACATC
GTCCGTTTCA TTTCCGCAAA GAAAAACGAA CCGGACTGGA TGCTGCAATG GCGTCTTGAC
GCTTACCAGC GTTGGCTGAC GATGGAAGAG CCCGATTGGG CTCGCGTCCA CTATCCGAAG
ATCGACTTCA ACGATATCTA TTACTATGCC GCGCCGAAAA GCACGGCTGG CCCGACCTCA
ATCGACGATG TCGATCCTGA GCTTTTGAAG GTCTATGAAA AGCTGGGCAT TCCGCTGCGC
GAGCAGGAAA TCCTGGCAGG CGTCCAGACC TCGAAAATTG CCGTCGATGC GGTCTTCGAT
TCGGTCTCTG TTGTCACCAC GTTCAAGGCT GAATTGATGA AAGCCGGCGT GATCTTCATG
TCGATTTCGG AAGCCGTGCG CGAATATCCT GATCTGGTGA AGAAATATCT AGGCACCGTC
GTGCCTGTCA CCGACAATTA TTACGCAACG TTGAATTCGG CAGTGTTTAC CGATGGTTCA
TTTGTGTTCA TTCCAAAGGG CGTTCGTTGC CCGATGGAAT TGTCCACCTA TTTCCGCATC
AACGAGAAAA ACACCGGCCA ATTCGAACGC ACGCTGATCA TTGCCGAAGA AGGCGCTTAC
GTCTCCTATC TCGAAGGCTG CACGGCCCCG CAGCGCGATG AAAACCAGTT GCATGCCGCC
GTGGTCGAGC TGGTGGCGCT GGACGATGCC GAGATTAAAT ATTCCACCGT CCAGAACTGG
TATCCGGGTG ACAAGAACGG CAAGGGCGGC ATCTATAATT TCGTCACCAA GCGCGGCGAT
TGCCGTGGCG CGCGGTCGAA GATTTCGTGG ACGCAGGTCG AGACCGGATC GGCGATCACC
TGGAAATACC CGTCCTGCAT TCTGCGCGGC GATGACAGCC GCGGTGAGTT CTACTCGATT
GCCGTTTCCA ACGGTTATCA GCAGGTCGAT AGCGGCACCA AGATGATCCA TCTCGGCAAG
AATACGTCGA GCCGCATCAT CTCCAAGGGC ATTTCGGCGG GCTTTTCCAG CAATACCTAT
CGCGGCCAGG TTTCTGCGCA TCGCAAGGCT GAAAATGCCC GTAACTTCAC CCAGTGCGAC
AGCCTGTTGA TCGGCGACAA ATGCGGGGCG CATACCGTAC CCTATATCGA GGCGAAGAAC
TCTTCGGCTC AGTTCGAGCA TGAGGCGACA ACCTCGAAAA TCTCGGAAGA CCAGCTGTTC
TACTGCCTGC AACGCGGCAT TCCCCAGGAA GCCGCCATCG CCCTGATCGT CAATGGTTTC
GTGCGCGAAG TCATCCAGGA ATTGCCGATG GAATTTGCGG TTGAAGCGCA GAAGCTGATC
GGGATTTCAC TTGAGGGTAG CGTGGGGTGA
|
|---|
| Protein sequence | MAAVQETIDQ VRQIDVDQYK YGFETMIEVD KAPKGLSEDI VRFISAKKNE PDWMLQWRLD
AYQRWLTMEE PDWARVHYPK IDFNDIYYYA APKSTAGPTS IDDVDPELLK VYEKLGIPLR
EQEILAGVQT SKIAVDAVFD SVSVVTTFKA ELMKAGVIFM SISEAVREYP DLVKKYLGTV
VPVTDNYYAT LNSAVFTDGS FVFIPKGVRC PMELSTYFRI NEKNTGQFER TLIIAEEGAY
VSYLEGCTAP QRDENQLHAA VVELVALDDA EIKYSTVQNW YPGDKNGKGG IYNFVTKRGD
CRGARSKISW TQVETGSAIT WKYPSCILRG DDSRGEFYSI AVSNGYQQVD SGTKMIHLGK
NTSSRIISKG ISAGFSSNTY RGQVSAHRKA ENARNFTQCD SLLIGDKCGA HTVPYIEAKN
SSAQFEHEAT TSKISEDQLF YCLQRGIPQE AAIALIVNGF VREVIQELPM EFAVEAQKLI
GISLEGSVG
|
|---|
| |