Gene Avi_2432 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2432 
SymbolrhtB 
ID7386061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp2001662 
End bp2002285 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content57% 
IMG OID643651554 
ProductRhtB family transporter 
Protein accessionYP_002549743 
Protein GI222148786 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.274649 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACCTGC ATTCAATGCT CACCTTTGCG CTGGCCTTTC TGGTGTTTGC TGCCAGTCCC 
GGTCCTGATA ATGTGACGAT CATGGCCCGC ACCCTTTCCC ATGGGCCAGC GTCGGGTCTT 
GCTTATGGCC TGGGTACGGT AACCGGCATC CTGATTTATT TGACGCTTGC ATTTTTCGGC 
CTGTCCGTGC TGGCGCAGGA TATGGGCTGG CTGATGGAGC TTTTGCGCTA CGGCGGTGCG 
GTTTATCTCA TCTGGATGGG TGTCCGCCTG TGGATGGCAA AGCCGGTCCT GCCGCAGATG 
GTGCCTATGG AGCGCCGTGG ATCACTGTTC CCCGTGTACC TGACAGGTTT CGCGCTCAAT 
CTCGGCAATC CGAAAATGCC GCTTTTCTAT CTGGCGCTGC TGCCGAATTT CGTACCCGCA 
TCCTTCAATG TGTCGGCGCT GATCGATATT ATCGGGATCA TTCTTGCGGT CGAGACCGCG 
GTGATCGGTG GCCATATCTT TCTGTCGGAA CGGGCCAGAC GCGTCCTGAA AACACCCCGT 
AGCGTGGCGC TGATAAACCG CACGACCGGA GGTTTTTTGG GTGCTGCCGG GCTGGCTATT 
CTCGCATCTG GCCGCGGAAA TTGA
 
Protein sequence
MDLHSMLTFA LAFLVFAASP GPDNVTIMAR TLSHGPASGL AYGLGTVTGI LIYLTLAFFG 
LSVLAQDMGW LMELLRYGGA VYLIWMGVRL WMAKPVLPQM VPMERRGSLF PVYLTGFALN 
LGNPKMPLFY LALLPNFVPA SFNVSALIDI IGIILAVETA VIGGHIFLSE RARRVLKTPR 
SVALINRTTG GFLGAAGLAI LASGRGN