| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2420 |
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| Symbol | |
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| ID | 7386053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1993732 |
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| End bp | 1994493 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651546 |
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| Product | gluconate dehydrogenase |
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| Protein accession | YP_002549735 |
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| Protein GI | 222148778 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.406064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAGGT TTGTGATCAT CACCGGCGGC AGCACGGGCA TAGGGCGCCA GCTGGTCCAG
GCTTTTGCCG GTCTGGGCGA CACGGTGGCC TTCAGCTATC TCGGCGACGA TGCACCGGCC
AAAAGCCTGG TGTCCCTGAT GGAGCAACAG GGCCGCAACG TGCTGGCCCT TTCCGCCGAT
GTCGGCGACG GAGACACCGT CGAGCAATTC TTCAACCAGG CCTGTGCCTG GGCCAAGGCA
AGCCCGGCTG TCCTCATCAA CAATGCCGGT GTGCAGACCT GGTCCAGCCT GCTCGATCTC
TCCGAAAAAG ACTGGAACCG GGTGATCCGC ACCAATCTGA CCGGGACATT TCTCAATACC
AAGGCGGCTG CAAGCCGGAT GGTGGCAGCT GGTAACGGTG GCGCCATCGT CAATATCGGC
TCGGGCTGCA ACAAGCTCGC CTTCCCGAAT CTGGTTGATT ACACCGCCTC CAAGGGCGGG
GTCGAGCAAT TCACCAAAGT GGCCGCCGTC GAACTGGGGC CGCATGGCAT CCGGGTCAAT
TGCGTTGCCC CCGGTGCCAT TGCCACGGAA CGAACCTATG AGGAAGCGCC TGACTATGGC
GAAGTCTGGG GCAAGGTCAC GCCACTGCGC CGGGTGGGGA CGCCGCAGGA TATTGCCGGC
CCCGTGCTCT ATCTCGCCAG TGACGCGGCT GGCTTCGTGA CCGGTCAGAC GCTCTGGGTC
GATGGCGGCC TGTTTACACG GCCAGTTTGG CCTTACGAAT AG
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| Protein sequence | MGRFVIITGG STGIGRQLVQ AFAGLGDTVA FSYLGDDAPA KSLVSLMEQQ GRNVLALSAD
VGDGDTVEQF FNQACAWAKA SPAVLINNAG VQTWSSLLDL SEKDWNRVIR TNLTGTFLNT
KAAASRMVAA GNGGAIVNIG SGCNKLAFPN LVDYTASKGG VEQFTKVAAV ELGPHGIRVN
CVAPGAIATE RTYEEAPDYG EVWGKVTPLR RVGTPQDIAG PVLYLASDAA GFVTGQTLWV
DGGLFTRPVW PYE
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