Gene Avi_2414 details

Gene Information

• Locus tag: Avi_2414
• Symbol: ilvD
• ID: 7386047
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1986157
• End bp: 1987992
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643651540
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_002549729
• Protein GI: 222148772
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0395754
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGCCT ATCGCTCAAG AACCACGACC CATGGCCGCA ACATGGCAGG CGCGCGCGGC 
CTTTGGCGCG CAACCGGCAT GAAGGATGGC GATTTCGGCA AGCCGATTAT TGCCGTAGTC 
AACTCCTTCA CGCAATTCGT ACCCGGTCAC GTGCATCTGA AGGATCTAGG CCAGCTCGTG 
GCCCGCGAAA TCGAAGCAGC TGGCGGCGTT GCCAAGGAAT TCAACACCAT CGCCGTGGAT 
GACGGCATCG CGATGGGCCA CGATGGCATG CTCTATTCGC TGCCATCGCG CGAAATCATC 
GCCGACTCGG TGGAATATAT GGTCAATGCC CATTGCGCCG ATGCCATGGT CTGCATTTCC 
AACTGCGACA AGATCACCCC CGGCATGTTG ATGGCATCGT TGCGCCTGAA CATCCCAACT 
GTGTTCGTCT CTGGCGGACC TATGGAAGCG GGCAAGGTTG TCATGCATGG CAAGAAGGTC 
GCACTTGACC TCGTGGATGC CATGGTCGCC GCTGCTGACG ACAAGATTTC GGATGAAGAT 
GTAGCGACCA TCGAGCGTTC TGCCTGTCCG ACATGCGGCT CATGCTCTGG CATGTTCACC 
GCCAATTCCA TGAACTGTCT CACGGAAGCC CTCGGCCTGT CCTTACCCGG CAATGGCTCA 
ACGCTGGCAA CCCACTCCGA CCGCAAGCGG CTGTTTGTGG AAGCGGGTCA TCTGATCGTT 
GACATCACCC GCCGCTACTA TGAGCAGGAC GATGAAAACG TGCTGCCGCG CAACATCGCC 
TCCAAGCAGG CGTTTGAAAA TGCCATGGCG CTGGACATTG CCATGGGCGG CTCCACCAAC 
ACCGTGCTGC ATATTCTGGC CGCCGCCTAT GAAGGCGAGA TTGATTTCAA TCTTGATGAT 
ATTGACCAGT TGTCGCGTCG CGTGCCGTGC CTGTCCAAGG TGGCACCGGC CAAGCAGGAC 
GTGCATATGG AAGACGTTCA CCGTGCAGGC GGCATCATGC GCATTCTCGG CGAGCTGGAT 
CGTGGTGGCT TGATCAACCG CGACTGCCCA ACCGTTCATG CGCCAACACT GGGCGATGCT 
ATCGACCGTT GGGATATCAC GCGCACCAAC TCTGAAACCG TGCGCGAGTT CTTCCGCGCT 
GCCCCCGGCG GCGTGCCAAC GCAAGTGGCG TTTTCGCAGT CTTCTCGCTG GGATGAGCTG 
GACATGGACC GCGAAAATGG CGTTATCCGC TCGGTTGAAA AGCCATTCTC CAAGGATGGT 
GGTCTGGCGG TGTTGAAGGG CAATATCGCC TTGGATGGCT GCATCGTCAA AACCGCTGGT 
GTCGATGAAA GCATCCTGAA ATTTACCGGT CCGGCCAAGG TCTATGAAAG CCAGGATTCG 
GCAGTCAAGG CCATTCTCAG CAATGAGGTC GTGGCAGGCG ACGTTGTGGT CATCCGCTAC 
GAAGGACCGA AGGGCGGCCC GGGCATGCAG GAAATGCTGT ACCCAACCAG CTACCTGAAA 
TCCAAGGGCC TCGGCAAGGT CTGCGCCCTG ATCACCGACG GCCGCTTCTC CGGCGGCACA 
TCGGGCCTGT CCATTGGCCA CGTCTCGCCA GAAGCGGCGA ACGGTGGCAC CATCGGCCTG 
GTGCGCAACG GCGACACCAT CGCCATCGAC ATCCCGAACC GTACCATCGA ACTGATGCTG 
TCCGAAGGCG AGCTCGCCGC CCGCCGCGTC TCACAGGATG CCGCTGGCTG GAAGCCTGCT 
GAGCACCGCA AGCGCAAGGT GACAACGGCG CTGAAAGCCT ATGCTGCGTT TGCGACGTCG 
GCAGATTTGG GCGCTGTGCG GAAATTACCG GAGTAA 

 

Protein sequence

MPAYRSRTTT HGRNMAGARG LWRATGMKDG DFGKPIIAVV NSFTQFVPGH VHLKDLGQLV 
AREIEAAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSREII ADSVEYMVNA HCADAMVCIS 
NCDKITPGML MASLRLNIPT VFVSGGPMEA GKVVMHGKKV ALDLVDAMVA AADDKISDED 
VATIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS TLATHSDRKR LFVEAGHLIV 
DITRRYYEQD DENVLPRNIA SKQAFENAMA LDIAMGGSTN TVLHILAAAY EGEIDFNLDD 
IDQLSRRVPC LSKVAPAKQD VHMEDVHRAG GIMRILGELD RGGLINRDCP TVHAPTLGDA 
IDRWDITRTN SETVREFFRA APGGVPTQVA FSQSSRWDEL DMDRENGVIR SVEKPFSKDG 
GLAVLKGNIA LDGCIVKTAG VDESILKFTG PAKVYESQDS AVKAILSNEV VAGDVVVIRY 
EGPKGGPGMQ EMLYPTSYLK SKGLGKVCAL ITDGRFSGGT SGLSIGHVSP EAANGGTIGL 
VRNGDTIAID IPNRTIELML SEGELAARRV SQDAAGWKPA EHRKRKVTTA LKAYAAFATS 
ADLGAVRKLP E