Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2410 |
Symbol | |
ID | 7386043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1980464 |
End bp | 1982338 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651536 |
Product | hypothetical protein |
Protein accession | YP_002549725 |
Protein GI | 222148768 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.361804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGTTC TGGTGGATGA GATGGGTTCG CAAGCCTCGG ATCTCGACCT GAGGATTCTT GCGGCCAAAA CTCTGGAATC GGCAGGCAAA ATCATTGATG CCGCACAAGC CTTCGTTGAT CTCGCAGAGA GTGTCGCATC GTTTGATCCC TCCGCCCAGG CGGGGTTTCT CGGCCATGCG GCGCGTCTCT ATCTAGCGGC CATGCAGCAG GAAAAGGCCG TTGCTCTTGC CTTGAACAGC CTCGCAATTG GCCCCGCGAC CTTGGACGCT GCCTATGTGG TGCTGAAATC TGGAACTGTT CCTCTGTCCA GCGCGGCAAA AGACGCCCTG ATCGCCACGC TGGGGACAAG CAATGATATC GATGATCTGG TGCTTGCCGC CCTGTCGATC GGCAATGACA TCCACCATCC ACTCTGCCTG CCGATTTATA CAAGCCTGCG GCAGTTGCGC CCGGACCTGC CGAAAGTGCG CATGGCGCTG GTGCAGATTG CCCGGATGCA ATGCAATTAC GACATCCTGA CAGCCGAGGA GGCACTGCTG CACCGGGATA TCGCGGCTGG CAAGGTGGAT TTTCTCGCCA TGGAATCGCC CCATGCCAAT CTGATGTGGC TGGCGGATGA ACGCCTGAAC AGGCTTGCCC GTTACTATAC GATGACACAG GCGATGACGG CGGCCTCACA GACAACACGG CGCAGTCTGC CGCATGTCTG GGGCGAAAAG CTGAGAATTG GCTATCTTTC CGGCGATTTC TGGGACAATC ACGCCACGAT GCGTTTGCTG CGCAGCGTAT TGACCAGCCA TGACACCAGC CGTTTCGAGA TCTTTCTGTT TTGCCACACG CCTCGCCACC TCGTCGATAT CGATAAGGGC GGTCGTCAGC AATGGGGGGC GATCACCTCG ATTGCCGACC AGACTGACGA TGAGGCAGAA GCGACGATCC GGGCCATGAA GATCGACATC ATGGTCGATC TGAAAGGCCA CACACGCGAC AGCCGCTCCG GGCTGATGAA CCGCCCTCTT GCACCGGTTC ATGTCGCGTG GCTGGGCTTT CCCGGCAGTT GTTGCGATGT CGATTGCGAT TACGTCATTG GCGACCGTAT AGTGCTGCCG GATAGCGCTA AGCCTCACTA TCACGAGAAA TTCTGCCGAC TGCCGGAAAG CTACCAGCCG AACGATCCGT TTCATCGTCC CTTGCCGTCC GCTTCGTCCC GCATGGCGCT TGGCCTGCCT GCGGACAGAG TGGTGATCGG TGCCTTCAAT AGCCAGTCGA AAAACACGCC GGAAACCTTG CGGCTTTGGG CGCGCATCCT CAAGGCCAAT CCAACGGCTC TGCTCTGGAT GATGGTCGAT GGCCATAGCG CTCGCCAATC CACCGCCGCC TTCTTCAAAT CGCTTGGTGT GAAGCAATCG CAACTGCTGT TTGCCCCGAA AATGCTGTAT GAAAACCATA TCGCCCGCGC CCAGGCTGCC GATTTTGCCA TCGATAGTTT TCCCTATAAC GGCCACACGA CCACCTCGGA TATGCTGTGG GCGGGCCTGC CTGTTATAAC GAAGCGGGGT ACGAATTTCG CGTCTCGCGT CTCGGAAAGC CTGTTGAAAG CCATCGGTCT CGATGAGCTG GTGGCGCGAG ACGAAGACAA TTTCGTCGAG CTTGCCACGG TAATGATCAA TGATCCCGCC AGGATTGCCC GATTGAAGGC GCATATCGCC GAACAACGGT TTATAGCGCC TTTGTTTGAT GCGACGCGGT TTTGCCACCA TCTGGAGGCG GCTTATGACA CCATGGCAGA CTGCGCCAAG GCGGGCCTTA CACCGGATCA TTTCGATGTC GTAGCCCTGC CCCGTGATGG CGCCAGTTTT CAACGCGCCT CGTAG
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Protein sequence | MTVLVDEMGS QASDLDLRIL AAKTLESAGK IIDAAQAFVD LAESVASFDP SAQAGFLGHA ARLYLAAMQQ EKAVALALNS LAIGPATLDA AYVVLKSGTV PLSSAAKDAL IATLGTSNDI DDLVLAALSI GNDIHHPLCL PIYTSLRQLR PDLPKVRMAL VQIARMQCNY DILTAEEALL HRDIAAGKVD FLAMESPHAN LMWLADERLN RLARYYTMTQ AMTAASQTTR RSLPHVWGEK LRIGYLSGDF WDNHATMRLL RSVLTSHDTS RFEIFLFCHT PRHLVDIDKG GRQQWGAITS IADQTDDEAE ATIRAMKIDI MVDLKGHTRD SRSGLMNRPL APVHVAWLGF PGSCCDVDCD YVIGDRIVLP DSAKPHYHEK FCRLPESYQP NDPFHRPLPS ASSRMALGLP ADRVVIGAFN SQSKNTPETL RLWARILKAN PTALLWMMVD GHSARQSTAA FFKSLGVKQS QLLFAPKMLY ENHIARAQAA DFAIDSFPYN GHTTTSDMLW AGLPVITKRG TNFASRVSES LLKAIGLDEL VARDEDNFVE LATVMINDPA RIARLKAHIA EQRFIAPLFD ATRFCHHLEA AYDTMADCAK AGLTPDHFDV VALPRDGASF QRAS
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