| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2390 |
|---|
| Symbol | ccoG |
|---|
| ID | 7386027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1959625 |
|---|
| End bp | 1961211 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643651520 |
|---|
| Product | cytochrome c oxidase accessory protein CcoG |
|---|
| Protein accession | YP_002549709 |
|---|
| Protein GI | 222148752 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0348] Polyferredoxin |
|---|
| TIGRFAM ID | [TIGR02745] cytochrome c oxidase accessory protein FixG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.399444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCA ATGGGATAGA GACACGACCG GATGTTGAGC GTTTTACCGC CGAGCCGGTG
AATTCCGCCA AAATTCGCAG GCCGCTCTAT GAAGCCCGCA AGAAGATCTT TCCAAAGCGT
GCTTCGGGCC GTTTCCGGCA GTTCAAATGG CTGATCATGG CCATTACGCT TGGGATTTAC
TATCTCACGC CTTGGCTGCG CTGGGATCGT GGTGCCTATG CCCCGGATCA GGCGGTATTG
ATCGATCTGG CGCATCGGCG CTTCTACTTC TTTTTCATCG AGATCTGGCC GCAGGAGTTT
TTCTTTGTCG CGGGCCTGCT GGTCATGGCG GGGTTTGGCC TGTTCCTGGT CACGTCAGCG
GTCGGGCGCG CCTGGTGCGG CTATACCTGT CCGCAGACGG TCTGGGTCGA TTTGTTTCTG
GTGGTCGAGC GCTTTTTGGA AGGCGACCGA AATGCCCGCA TCAAGCTGGA CGGCGCGCCT
TGGAGCCCGT CCAAGATTTG GAAACGGGGT GCCAAGCATG TCACCTGGAT CATCATCGGC
GTGCTGACCG GCGGCGCGTG GATCTTCTAT TTCGCCGATG CGCCGAGCTT GCTGAAGGAG
TTCGTCACCG GTCAGGCCGC CGGCGTTGCC TATGTCACTG TCGCCATCCT CACCGCCACA
ACCTATGTGT TCGGCGGGCT GATGCGCGAG CAGGTCTGCA TCTATATGTG TCCATGGCCA
CGCATTCAGG GCGCCATGCT GGACGAAAAG TCGCTGGTCG TGACCTATAA TGATTGGCGC
GGCGAGCCAC GGACCCGTCA CGCCAAGAAA GTCGCCGCAG CCGGTGAGAC TGTCGGGGAC
TGTGTCGATT GCAATGCCTG CGTGGTGGTC TGTCCGATGG GCATCGACAT CCGCGAAGGT
CAGCAGCTGG AATGCATCAC CTGCGCGCTT TGTATCGATG CCTGCGATGG GGTTATGGAT
AAGCTTGCCA AGCCGCGTGG GCTGATCGCC TATGCGACAT TGGAGGAATA TCAATCCAAT
ATGGCGCTGG CGACCGATAA CGGCACCCAG TCGATCGATC CCGACCGGGT CCGCAAGGCC
GATGGCAGCT TTGTCGATTC CATCAGGCAT TTCGACTGGC GGGTGATTTT CCGGCCCCGG
ACCTTGCTGT ATACAGCCGT CTGGTCAGCC GTCGGCGGCG GCCTGTTGTT TGCGCTGATG
ACCCGCGACA GGCTGGACAT CAACGTGCTG CATGACCGCA ATCCGCAGTA TGTGCTCGAA
TCGAGTGGCG CGATCCGAAA CGGCTATACG GTGCGGCTGC TCAACATGAT CCCGCAACCA
CGCGACCTGA CGGTGACGCT GGACGGCCTT CCTGACGCCA CCATGAAGGT CAACGGCATG
CAGGACCAGC CCGGTCGGTC GATCATCGTC ACGGCGGAAC CGGATGAGGC GACCACGCTG
AAGATCTACG TCACGCTTGC CGGTCGTGAC GTGACGGAGG CTTCCGAGCC ATTCCGCTTT
ATCGTCAGTG ATCCGAATTC CAGCGAGCAG GCCATCTACA AGGCTACATT TAACGGTCCC
GGCAACGGAT CTGGAGAGAA AAAATGA
|
|---|
| Protein sequence | MTSNGIETRP DVERFTAEPV NSAKIRRPLY EARKKIFPKR ASGRFRQFKW LIMAITLGIY
YLTPWLRWDR GAYAPDQAVL IDLAHRRFYF FFIEIWPQEF FFVAGLLVMA GFGLFLVTSA
VGRAWCGYTC PQTVWVDLFL VVERFLEGDR NARIKLDGAP WSPSKIWKRG AKHVTWIIIG
VLTGGAWIFY FADAPSLLKE FVTGQAAGVA YVTVAILTAT TYVFGGLMRE QVCIYMCPWP
RIQGAMLDEK SLVVTYNDWR GEPRTRHAKK VAAAGETVGD CVDCNACVVV CPMGIDIREG
QQLECITCAL CIDACDGVMD KLAKPRGLIA YATLEEYQSN MALATDNGTQ SIDPDRVRKA
DGSFVDSIRH FDWRVIFRPR TLLYTAVWSA VGGGLLFALM TRDRLDINVL HDRNPQYVLE
SSGAIRNGYT VRLLNMIPQP RDLTVTLDGL PDATMKVNGM QDQPGRSIIV TAEPDEATTL
KIYVTLAGRD VTEASEPFRF IVSDPNSSEQ AIYKATFNGP GNGSGEKK
|
|---|
| |