| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2356 |
|---|
| Symbol | |
|---|
| ID | 7386003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1924481 |
|---|
| End bp | 1926400 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643651496 |
|---|
| Product | variable tail fibre protein |
|---|
| Protein accession | YP_002549685 |
|---|
| Protein GI | 222148728 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.164257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG TCCAGAGCAA AAACGCATTT CTGTATGACC TCAATGGTGA CGCCGGCGAG
CTGAAAATCG CCTTGCGCGA AGCTATGGAG CTTGGCAGCG CGGCTGATCT GGATGCATCC
GAATTCGCAT CCGCGGGGCA GGGGGATAAG GCCGACACGG CAATCCAGCC CGCCGCATTG
GCCGCGACGG TAACGGAGGT GATCAACCGC GCGAACCACA CCGGCGAGCA GGCGATGGCC
ACGATTACCG GATTGATCGC TGCGCTGGCC AGCAAAGCCA CGCCAGCTGA TATCTCGGCT
GCCATTGCCG CGCTGGTCAA TAGTTCGCCT GCGGCGCTCG ATACGCTGAA TGAGCTTGCC
ACGGCGCTTG GCAACGACCC GAATTTTGCA ACGACCATGA CAACGTCGCT TGGCAACCGG
CTGCGGGTGG ATACAGCAGC GCAGGGATTG ACCGCGGATC AGAAGGCTAA TGGTCGCGCA
AACCTCGACA TCAAATCAGC AGCGCTTCAA GAGGCCTCGT TTTTTGCGCC GGCGCTGGCG
TTGCGTGGAT CGTACAACCT GGCGCAAGCC TCCGGCGCTG GAGCTGGTGA CGCGGCTGCC
GACACGGCGG CATTTGCGGC GGCAATCACG GGTGGATATG GCAAGATCAT TATTCCCCGT
GTTGGCAGCG TTTGGCAATT TAACCCGACC ACGGTCAATG CGGCGCTGGA AACTCGACGA
AATGGGTCTA GTGTGTATGA ATTAGACATC GAAGGTCGGG GAATGCCTGA GATACGGGCG
TCGGCGGTCG GTACATATCT GTTTAATATT CTGGCCGGAT CAATGGAGGT GTCTGGTCTC
CGGTTTACAG ATGGGGCAGG CCGGTTGCAG TCATTTATGA ATCTGAACAA GACGACACCA
TATCGATTGT CCGTCCATGA CATTGAAGTG CACACCACTG CGAAAGGAAT CCGCGTCGAA
GCTCTGTCGA AAGCGGTTAT TTCTAAAATT TACGGGATTG ATGTGCCTCT CCTGATTCAT
AGGCCGGCAG TGGAGAGTAC GATATGCGTG GACGCGACTT TTGAAAACAT TAGCGGCGAT
AATTCCAAGA TCCTGTTCCA GGGCACGGGT GAAATTGTAA CTGAAGGTGT CACTTTCCGA
GAGATCCGCC TCACAACTAA TGCAGGGGAT TCCTTTACGA TTGAACAATC TCTTGCCTGC
CAGATCGTCA ATTGTATGTT GGATGGTCAG TATTCTCCAA GCGAGACGGT TGGTGCGGGC
GGCATGGGTC TCGTTTTAGG GTCCGCTGCT GGCGGCGCCA ACGTCGGTCT TAGCATCAAG
GATACATGGC TTGGTGCGGG AAAAAATGCC AAGGCACATA TGTACTCAGT GCCGGGTTCA
AACAATGCCG CGATTATGAT TGATGGCATT ACTTGTGGTG CACAAGATGG GGCAGTTGGA
ACAATTCCGT CTCGATTGAA TCTTACCGGG ATCAATGGCT TACGTGTGGG CACTGTCAAG
TCTACAGGGG CGGCACCAAC CACTGATGTG TTTACTAACT CAAGTGAGAT GCCCCGCGAT
TTCTTGCCAG CCATTCCTGT GGCGATCAGT CAAGCCACTG GAATTGCCGT AGAGTCTGGG
GCCATCACAG CTGCATCAGG GACCGTTAAT TATCGCAAGT CCGATGGTGT GGTTTATGTT
GATGGTACCG TCACGATCAC GACAGCGGGC ACGGGCAACG GTATCTTGAT CTTGTCTCCT
ACTGGCCTCC CGGCGCCCGC GTTTGTTGAC GCGATCATTC CATGTTTCTT ATCTACGGGC
GCTTCGGGCC GGGCAACTGT ATCATCTGGC GGCTCTTTAC TTCTGGTGTC CAGCTCAGGT
GCCTCGGTCA TTGCTTCGGG CACAACAATA AAGTTCAACG GTTGCTACAG GGCGGCTTAA
|
|---|
| Protein sequence | MSKVQSKNAF LYDLNGDAGE LKIALREAME LGSAADLDAS EFASAGQGDK ADTAIQPAAL
AATVTEVINR ANHTGEQAMA TITGLIAALA SKATPADISA AIAALVNSSP AALDTLNELA
TALGNDPNFA TTMTTSLGNR LRVDTAAQGL TADQKANGRA NLDIKSAALQ EASFFAPALA
LRGSYNLAQA SGAGAGDAAA DTAAFAAAIT GGYGKIIIPR VGSVWQFNPT TVNAALETRR
NGSSVYELDI EGRGMPEIRA SAVGTYLFNI LAGSMEVSGL RFTDGAGRLQ SFMNLNKTTP
YRLSVHDIEV HTTAKGIRVE ALSKAVISKI YGIDVPLLIH RPAVESTICV DATFENISGD
NSKILFQGTG EIVTEGVTFR EIRLTTNAGD SFTIEQSLAC QIVNCMLDGQ YSPSETVGAG
GMGLVLGSAA GGANVGLSIK DTWLGAGKNA KAHMYSVPGS NNAAIMIDGI TCGAQDGAVG
TIPSRLNLTG INGLRVGTVK STGAAPTTDV FTNSSEMPRD FLPAIPVAIS QATGIAVESG
AITAASGTVN YRKSDGVVYV DGTVTITTAG TGNGILILSP TGLPAPAFVD AIIPCFLSTG
ASGRATVSSG GSLLLVSSSG ASVIASGTTI KFNGCYRAA
|
|---|
| |