Gene Avi_2294 details

Gene Information

• Locus tag: Avi_2294
• Symbol: dnaE
• ID: 7386377
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1882221
• End bp: 1885514
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643651459
• Product: DNA polymerase III alpha chain
• Protein accession: YP_002549648
• Protein GI: 222148691
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0587] DNA polymerase III, alpha subunit
• TIGRFAM ID: [TIGR00594] DNA-directed DNA polymerase III (polc)

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATATG CCGAGCTTCA GGTCACCACC CATTTCTCGT TCCTGCGCGG TGCCAGCAGC 
GCGATAGAGC TGTTTGAGAC AGCAAAGAGC CTCGGCATCG ATGCCATCGG TGTTGTTGAT 
CGCAATTCGC TCGCCGGCAT TGTTCGGGCA CTGGAAGCGT CCCGCGCCAC CGGTGTGCGC 
CTGGTCGTCG GTTGTCGGCT GGATCTGCAG GATGGCATGT CGATCCTGGT TTACCCGACG 
GACCGCACGG CCTATTCTCG GCTGGCCCGG TTGATTACGC TGGGTAAGGG CAGAGGCGGC 
AAGGACAATT GCATTCTGAT GCTTGATGAC ATCGCCCAGT ATGGCGAAGG CCTGCTCGGC 
ATATTGGTGC CCGATCTCGC CGATGACACG TGTGCTGTCC AACTGCGAAA GATGGCGGAG 
GTGTTCGGGG ACCTGGCCTA TCTCTCGCTG TGTCTGCGCC GTCGTCCGAA TGATCAACTG 
CGGCTGCACG AGCTTTCGAA CATGGCGACC CGCTTCAAGG TGAAGACCGT CGTCACCAAC 
GATGTCCTGT TTCATGAGCC GGGACGGCGG CAACTTCAGG ACATCGTCAC CTGCATTCGC 
AACAACACGA CGATCGATAC CGTCGGCTTC GAGCGCGAGC GTCATGCCGA TCGCTATCTT 
AAGCCTCCGG AAGAAATGGA ACGTCTGTTT CCGCGCTACC GGCAAGCATT GCGGCGAACC 
ATGGAAATTG TTGATCGGTG CAAATTCTCC CTTGAGGAAT TGACGTATCA GTATCCGGAA 
GAGGCTATCG TGCCTAGGAA GACAGCTCAG GAGTCCCTGG AGCACTACGT CTGGCAATGT 
GTGCCTGATC GCTACCCACA GGGCCTGCCC CCGAAGACTT TGCAGATCAT CCGCCACGAA 
CTCGACCTCA TTCATAAGAT GAAATACGCG CCGTATTTTT TGACGGTGTT TTCGATCGTT 
CGTTTTGCAA GGGCAAAAGG CATTCTCTGC CAGGGCCGTG GGTCCGCCGC GAACTCTGCT 
GTCTGCTATA TCCTCGGCGT GACGTCTATC GACCCGGAAA CCAATAATCT TCTATTTGAA 
CGCTTCGTCA GCCAGGAGCG GGATGAGCCT CCAGACATCG ACGTCGATTT CGAACACGAG 
CGACGTGAAG AGGTGATCCA GTGGATCTAT AAAACCTACG GCAAGGAAAA GGCAGCGCTC 
TGCGCGACGG TGAACCGGTA TCGGGCAAAG GGAGCCATTC GCGATGTCGG AAAGGCGCTT 
GGCTTGCCGG AAGACCTGAT CAAAGCGCTA TCATCGGGCA TGTGGTCCTG GTCGCAGGAG 
ACCAGCGATC GGAATGTGCG CGAGCTGAAC CTCAATCCAG ACGATCGCAG GCTGACCCTT 
ACTCTACAAT TGGCACAACA GTTAATGGGT GCTCCCCGTC ATCTGGGACA GCATCCGGGT 
GGCTTCGTGC TCACGCATGA TCGTCTCGAC GATCTCGTTC CCATTGAGCC ATCCACCATG 
GAGGATCGAC AGATCATTGA GTGGGACAAG GATGACGTCG AGGCGCTGAA GTTCATGAAG 
GTCGACGTGT TGGCACTCGG CATGCTGACT TGCATGTCTA AGGTTTTCGC TCTGATCCGC 
GAGCACAAGG GCGATGATCT GGATCTGGCA AAGATCCGCC AAGAAGATAA GGCGACCTAC 
GAGATGATCT GCAAGGCCGA TACGTTGGGG ACGTTTCAGA TCGAATCCAG AGCGCAGATG 
GCGATGCTGC CACGCCTGAA GCCCAAGACA TTTTACGACC TCGTCGTACA GGTGGCGATC 
GTGCGTCCTG GGCCGATCCA AGGAGATATG GTGCATCCTT ATCTGCGCCG GCGGGAGAAA 
AAAGAAGACG TCGACTATCC GACGCCGGAA CTGGAAGCCG TCCTCGGCAA AACGCTGGGC 
GTGCCACTGT TTCAGGAATC GGCGATGCGA GTCGCCATGG TCTGCGCCGG TTTTACCGGT 
GGCGAAGCCG ATCAGTTGCG AAAGAGCATG GCGACTTTCA AGTTCACGGG CGGCGTGAGC 
CGGTTCAAGG AAAAGCTGGT CTCAGGGATG GTCAAGAATG GCTACACTCC TGAATTTGCC 
GAGAAGACTT TCAGCCGACT CGAGGGCTTC GGGTCCTACG GCTTTCCGGA ATCGCATGCC 
GCATCGTTCG CGTTGATCGC CTATGCCTCG AACTATGTGA AATGCCATTT CCCTGATGTC 
TTTTGTGCTG CCCTGTTGAA CAGCCAGCCG ATGGGCTTTT ACGCACCCGC GCAGATTGTC 
GGCGATGCCC GCGCCCATGG CGTTGAGGTT CGTCCTGTCT GCGTCAATCG ATCGCGCTGG 
GATTGCACTT TGGAAAGGAT TGGCACCACG CAGCAGCATG CGGTTCGATT GGGCATGCGG 
ATGGTGAAAG GGTTGGTCGT TGCGGATGTA GCTCGGATCG TGGCGGCCCG AATGAATGGT 
CCGTTCGATT CTGTCGATGA CATGTGGCGG AGATCAGGCG TACCGGCGGC GTCACTGGTC 
GAACTGGCCC ACGCCGACGC GTTCCAGCCT TCCTTGAAGC TTGCACGGCG CGACGTGCTC 
TGGGCGATCA AGGCTTTGCG CGACGAGCCT CTGCCCCTGT TTGCGGCTGC CGCCGAACGT 
GAGATGAAGA CTATCGCCGA GCAAAACGAA CCAGAGGTCG AACTTCGGCA AATGACCAAA 
GGCCATAACG TAGTTGAGGA TTACGGGCAT ATCGGGCTCA CTCTTCGAGA TCATCCGATC 
GCTTTCCTGC GTACCGATCT GGCGAAACGC AATATTGTCA CCTGCGAGGA AGCGATGACC 
GCACGCGACG GTCGCTGGGT CATTACAGCA GGCTTGGTGC TGGTCCGGCA AAAGCCGGGC 
TCTGCCAAGG GCGTAATGTT CATCACAATT GAGGATGAGA CTGGACCTGC AAACATCGTC 
GTCTGGCCCA AACTGTTTGA AAAGCGGCGG CGTATCGTGC TCGGGTCATC GATGATGGCG 
ATCCATGGCC GAATTCAGCG AGAAGGAGAG GTTGTCCACC TTATCGCGCA GCAATTGTTC 
GACCTGACGT CAGACCTTTC CGGCCTTGCC GACAGGGATA TGGAGTTCAA GCTGCCGACA 
GGCAGAGGGG ATGAGTTTGC CCATGGTTCG CCGGGAGGCG GCGACAGCCG AGACAGGTCG 
CCACCAAAGC CTCGAGACAT CGTCGTGCCC TTATGTCGAG CTCGGCATAA AGGTATTGAT 
CCCGAGCCCG AGACTATGCC GAGCGCATTC CCTAAACCCC GAGATTTCCG GTAA 

 

Protein sequence

MRYAELQVTT HFSFLRGASS AIELFETAKS LGIDAIGVVD RNSLAGIVRA LEASRATGVR 
LVVGCRLDLQ DGMSILVYPT DRTAYSRLAR LITLGKGRGG KDNCILMLDD IAQYGEGLLG 
ILVPDLADDT CAVQLRKMAE VFGDLAYLSL CLRRRPNDQL RLHELSNMAT RFKVKTVVTN 
DVLFHEPGRR QLQDIVTCIR NNTTIDTVGF ERERHADRYL KPPEEMERLF PRYRQALRRT 
MEIVDRCKFS LEELTYQYPE EAIVPRKTAQ ESLEHYVWQC VPDRYPQGLP PKTLQIIRHE 
LDLIHKMKYA PYFLTVFSIV RFARAKGILC QGRGSAANSA VCYILGVTSI DPETNNLLFE 
RFVSQERDEP PDIDVDFEHE RREEVIQWIY KTYGKEKAAL CATVNRYRAK GAIRDVGKAL 
GLPEDLIKAL SSGMWSWSQE TSDRNVRELN LNPDDRRLTL TLQLAQQLMG APRHLGQHPG 
GFVLTHDRLD DLVPIEPSTM EDRQIIEWDK DDVEALKFMK VDVLALGMLT CMSKVFALIR 
EHKGDDLDLA KIRQEDKATY EMICKADTLG TFQIESRAQM AMLPRLKPKT FYDLVVQVAI 
VRPGPIQGDM VHPYLRRREK KEDVDYPTPE LEAVLGKTLG VPLFQESAMR VAMVCAGFTG 
GEADQLRKSM ATFKFTGGVS RFKEKLVSGM VKNGYTPEFA EKTFSRLEGF GSYGFPESHA 
ASFALIAYAS NYVKCHFPDV FCAALLNSQP MGFYAPAQIV GDARAHGVEV RPVCVNRSRW 
DCTLERIGTT QQHAVRLGMR MVKGLVVADV ARIVAARMNG PFDSVDDMWR RSGVPAASLV 
ELAHADAFQP SLKLARRDVL WAIKALRDEP LPLFAAAAER EMKTIAEQNE PEVELRQMTK 
GHNVVEDYGH IGLTLRDHPI AFLRTDLAKR NIVTCEEAMT ARDGRWVITA GLVLVRQKPG 
SAKGVMFITI EDETGPANIV VWPKLFEKRR RIVLGSSMMA IHGRIQREGE VVHLIAQQLF 
DLTSDLSGLA DRDMEFKLPT GRGDEFAHGS PGGGDSRDRS PPKPRDIVVP LCRARHKGID 
PEPETMPSAF PKPRDFR