Gene Avi_2276 details

Gene Information

• Locus tag: Avi_2276
• Symbol: phbC
• ID: 7386365
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1867417
• End bp: 1869387
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651442
• Product: poly-beta-hydroxybutyrate synthase
• Protein accession: YP_002549636
• Protein GI: 222148679
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG3243] Poly(3-hydroxyalkanoate) synthetase
• TIGRFAM ID: [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.0103313
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTGA CCACAGCATC GAAGGACCAA GGTCGCGCCG GTCAATCCCG TCCCGCGTCC 
GACGCGCCAG AACGCGGGCC GGAAACCAGC CAAGACACCG GGCCGAAAAC CAGCAAAACA 
GCAAACAACG CTGACGGTTC TGAATCCGAA AAGGCCGGTT TCAATCAAAT GGGTTTCGAC 
CCTTCCCTGA TCGATCCCTA TATCGTCAAG GACCCCGAAG CGCTGGCCGT CAATCTTGCC 
AAGGCGCTTG AAAACCTCGG CAAGGCGGCC TCCTCCTGGA TCGCACCGCG TGAAAAGACT 
GGTCTTGTCG ACCCTGTGGC GGAACCCGCC GTCGAATTGG TCAAGACCCT GTCAGGTGTG 
GCTGAATACT GGATGACCGA TCCGCAGCGC AGCCTGGAGG CGCAGACTCA TCTGATGACC 
TCCCTGTTCG GCGTCTGGAT GAAGAGCCTG AGCCGCCTTT CCATGCCAGC CCAAACACCT 
CCACCGCCCG AACCGATCAA GGACAAGCGA TTCGCGGATG CCGACTGGCA GCGCAATCCG 
TTCTTCGATT TTTTGCGCCA GGCCTATCTG GTCTTGTCCG ACTGGGCTGA GAAACTGGTG 
GAAAATACGC AAGGCATGGA TGAGCATGCG CGCCATAAGG CGCTGTTCTA CGTCCGGCAG 
ATGACGGCGG CGCTGTCGCC GGTCAATTTC GTCATGACCA ATCCGCAGCT TTACCGCGAG 
ACGGTCGCCA CCAGCGGCGC CAATCTGGTC AAGGGCATGA AAATGTTTGC CGAGGACATG 
GCCGCCGGTC AGGGTGAATT GCGGATGCGC CAGACCGACA CCAGCAAATT CGCGCTGGGC 
ACCAATATGG CGCTGACGCC GGGCAAGGTC GTCGCCCAGA GCGATGTCTG CGAGGTCATT 
CAATATGAAC CCGCCACCGA CAAGGTGCTG AAGCGGCCCC TGCTGATCTG CCCGCCCTGG 
ATCAATAAAT TCTATATTCT CGATCTCAAC CCCGAAAAGA GCTTCATCAA ATATTGCGTC 
GACCAGGGCC ACACCGTCTT TGTGATTTCC TGGGTCAATC CCGATCAACG CCATGCGGAC 
AAGGACTGGC TGTCCTATAT TCGCGAAGGC GTGGATTTTG CCCTCGACAC CGTTGAGAAA 
GCCACTGGCG AAAAGAAGGT CAATGCCATC GGTTATTGCG TTGGCGGCAC TCTGCTGTCT 
GCCGCCATGG CGTTGCATGC CAAGGAAGGC AATAGCCGTA TTGCCAGCGC CACATTGTTC 
ACCACCCAGG TGGATTTCAC CCATGCAGGC GACCTGAAAG TCTTCGTGGA CGAGGAACAG 
GTGAGCGGGC TGGAAGAAAA GATGCGGCAG AAGGGCTATC TGGACGGCTC GAAAATGGCG 
TCCGCCTTCA ACATGCTGCG CTCCTCCGAG CTGATCTGGC CCTATTTCGT CAACAATTAC 
CTGAAGGGTC AGGACCCGAC CGCCTTCGAT CTCTTGTACT GGAATGCCGA TTCGACCCGG 
ATGGCGGCGG CCAATCACTC GTTTTATCTG CGCAATTGCT ATCTGGAAAA CAATCTGGCG 
CGCGGCAAGA TGCAGTTGGA TGGCAAGACC CTGTCGCTGA AGGACGTGAA AATCCCGATC 
TACAATCTCG CCACCAAGGA AGACCATATT GCCCCGGCGA AATCGGTGTT TGTCGGATCG 
GCCTGCTTTG GCGGTCCCGT CACCTATGTG ATGAGTGGGT CCGGCCATAT CGCCGGTGTG 
GTCAATCCGC CCGACAAGCG TAAGTACCAG TTCTGGACCA ATGGCAAGCC GGAGGGCACC 
TTCGAGGATT GGGTTGCCGG TGCCGAGGAA ACCGCCGGTT CCTGGTGGCC GCATTGGCAG 
AAATGGATCG AAGGATTGGA CAAACGCCGC GTGGCGGCCC GTAAACCGGG CGGCACGGCG 
CTGAATGCCA TAGGGGATGC GCCGGGCGCT TACGTGCTGG AGCGTGTCTA A 

 

Protein sequence

MALTTASKDQ GRAGQSRPAS DAPERGPETS QDTGPKTSKT ANNADGSESE KAGFNQMGFD 
PSLIDPYIVK DPEALAVNLA KALENLGKAA SSWIAPREKT GLVDPVAEPA VELVKTLSGV 
AEYWMTDPQR SLEAQTHLMT SLFGVWMKSL SRLSMPAQTP PPPEPIKDKR FADADWQRNP 
FFDFLRQAYL VLSDWAEKLV ENTQGMDEHA RHKALFYVRQ MTAALSPVNF VMTNPQLYRE 
TVATSGANLV KGMKMFAEDM AAGQGELRMR QTDTSKFALG TNMALTPGKV VAQSDVCEVI 
QYEPATDKVL KRPLLICPPW INKFYILDLN PEKSFIKYCV DQGHTVFVIS WVNPDQRHAD 
KDWLSYIREG VDFALDTVEK ATGEKKVNAI GYCVGGTLLS AAMALHAKEG NSRIASATLF 
TTQVDFTHAG DLKVFVDEEQ VSGLEEKMRQ KGYLDGSKMA SAFNMLRSSE LIWPYFVNNY 
LKGQDPTAFD LLYWNADSTR MAAANHSFYL RNCYLENNLA RGKMQLDGKT LSLKDVKIPI 
YNLATKEDHI APAKSVFVGS ACFGGPVTYV MSGSGHIAGV VNPPDKRKYQ FWTNGKPEGT 
FEDWVAGAEE TAGSWWPHWQ KWIEGLDKRR VAARKPGGTA LNAIGDAPGA YVLERV