| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2262 |
|---|
| Symbol | |
|---|
| ID | 7386354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1857803 |
|---|
| End bp | 1858474 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651431 |
|---|
| Product | hydrolase |
|---|
| Protein accession | YP_002549625 |
|---|
| Protein GI | 222148668 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGG TCCTGTTCGA TTGTGACGGT ACCTTAATCG ACAGCGCAGG CACCATTCAC
GAGAGCATGC GCCGTACGTT TCTTGCTTTC GGCAAGCCGG AGCCAACGCT TGCTGCGACC
AAAAGCATCA TGGGCCTGAC GCTGGATATC GCTATCGCCC GCATCGACGG CAAGCAGCAT
GTCGATGACG AAGCGGTGGC CATGCGGGAC CATTACAAAT CGCTGTTTAC CGAAGTGCGC
CAGGCACCCG GCTATAGCGA ACCGCTGTTT GACGGTATCC GCGCGTTGAT CGAGCGGCTG
GCTGCGGAAG ACGAAATCCT GATCGGCGCT GTGACCGGCA AATCCCGGCG CGGCTTGAAC
TATGTTCTCG ACGCTCACGG TTTTCAGTCC TATTTCACTG TGTCGCGTAC GGCGGACGAT
TGTCCGTCCA AACCGCATCC GGCTATGGTG ACGGAATGCT GCGACGAAAC CGGGATGGAT
TTGAAAGATA CCGTGGTGAT CGGTGACGCG ATCTACGATA TGCAAATGGC CAGAAGCGCT
GGCGTCAAGG CAATCGGCGT CAGTTGGGGC AGCGCCAGCA CCGACCAATT GAAGGCCAGC
GGTGCGCATC TCGTCGTAGA CCGGGCCGAC GAGCTTCTTG CTCATATTTT GGGGGTGACC
CATCATGCGT GA
|
|---|
| Protein sequence | MKLVLFDCDG TLIDSAGTIH ESMRRTFLAF GKPEPTLAAT KSIMGLTLDI AIARIDGKQH
VDDEAVAMRD HYKSLFTEVR QAPGYSEPLF DGIRALIERL AAEDEILIGA VTGKSRRGLN
YVLDAHGFQS YFTVSRTADD CPSKPHPAMV TECCDETGMD LKDTVVIGDA IYDMQMARSA
GVKAIGVSWG SASTDQLKAS GAHLVVDRAD ELLAHILGVT HHA
|
|---|
| |