| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2226 |
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| Symbol | gyrB |
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| ID | 7386332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1827876 |
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| End bp | 1829984 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651409 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_002549603 |
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| Protein GI | 222148646 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0672502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGATA ACAACGACCT TTTCGCCGCC CTGCCGTCAA CGCCTGCCGA GGCGGCGAAG
ACGCAGAAAG GTGCTGCCGA TGTGACGGCT GCTGGTACGG CGCCTGTTAC TGCCGCCCAA
CCGGAAACCC CGGCCAAGGC AGTGGCTTTC GGCTCAGCCA CGCCCGCCTC CACCGGCAAT
CCCGACGATT ATGGCGCGTC CTCCATCCGT GTTCTGGAAG GGCTGGAGCC GGTGCGGATG
CGTCCCGGCA TGTATATCGG CGGCACGGAC GAAAAAGCCC TGCACCATCT TTTTGCCGAG
GTGATCGACA ATTCGATGGA CGAGGCGGTG GCTGGCCATG CCAATTTCAT CGATGTCCAT
CTGGATGCCG AAGGCTTCCT GACGGTTTCC GACAATGGTC GCGGCATTCC CGTCGAGCTG
CATCCGCAGG TGCCGGGCAA ATCCACCCTT GAAGTGATCA TGACCAAGCT GCATGCGGGC
GGCAAGTTCG ACGGCAAGGC CTATGAGACC TCTGGCGGCT TGCACGGGGT CGGCGTATCC
GTCGTCAATG CGCTGTCTGA TCTGCTGGAA GTGGAAGTGG CACGCAATCG CAAGCTCTAT
CGCCAGCGTT TTTCGCGTGG CGTGCCGCTG GGCGGGCTGG AAGAATTGGG CGATGTCCAT
AATCGGCGTG GTACGCGGGT GCGCTTTCAC CCCGATCCGC AGATCTTCGG TGATCACGCA
AAATTCGATC CGGGCCGGAT TTTCCGCATG GCCCGCTCCA AGGCTTATCT GTTCGGCGGC
GTGGAAATCC GCTGGTCCTG CGATCCGGCA ATCCTGACCA CCGGCGGCGA CATCCCGGAT
AAGGCGGTAT TTCACTTCCC CGGCGGGTTG AAGGATTATC TGGCCGCGAC ACTCGGCAAG
GAGTTTACCG TCACCCGCGA AATTTTTGCT GGCAAAACCG AAAAGACCGG CGGCCATGGC
GCGATGGAAT GGGCCATTAC CTGGTATGGT GGCGATCCCC AGGTTCATTC CTATTGCAAC
ACCATCCCGA CGCCCGAAGG CGGCACGCAC GAGGCCGGTT TGCGCATTGC ACTGACCAAG
GGCTTGAAGA ATTATGCCGA ACTGACCCAG AATAAGCGCG CCCAGCAGAT CAGCACCGAT
GACGTGATGA TTTCGGCGGT CGGCATGCTG TCGGTTTTCA TCCGCGAGCC GGAATTCGTC
GGCCAGACCA AGGACAAGCT GGCGACGGTA GAAGCGCAGC GTCTGGTCGA AAACGCTCTG
CGCGATCCTT TCGACCATTA TCTGGCCGAC AATCCGAATG AAGCCGCCAA GCTGCTCGAT
TGGGTGATCG AGCGGGCCGA GGAACGGCTG CGGCGGCGCA AGGAAAAGGA AGTCAACCGC
AAGACCGCAG TGCGCAAGCT GCGCCTGCCC GGCAAGCTGG CGGATTGCGC CCAGAACACC
GCCGAAGGCG CGGAACTGTT CATCGTCGAG GGTGATTCGG CTGGCGGCTC GGCCAAACAG
GCCCGCAATC GCTCCAACCA GGCCATTCTG CCCTTGCGCG GTAAGATCCT CAATGTCGGC
AGCGCCAGCC GTGAAAAACT GATGGCCAAC CAGCAGATCG CCGACCTGAT CCAGGCGCTC
GGCTGTGGCA CGCGGACGAA ATATCGTGAT GAAGACCTGC GCTATGAGCG TATCGTCATC
ATGACCGATG CCGATGTGGA CGGCGCCCAT ATCGCTTCAC TGCTAATCAC CTTTTTCTAT
CAGGAAATGC CGGAACTGAT CCGGGGCAAT CATCTCTATC TCGCCGTGCC GCCGCTTTAT
GTGATCCGTC AGGGCGCAAA GACCGTTTAT GCCCGCGACG ACGCCCACCG TGCCGAACTG
ATGGAAACCA CATTCAAAGG CAAGAAAGTC GAAATCGGCC GCTTCAAAGG TCTCGGCGAA
ATGATGCCGG CGCAGTTGAA GGAAACCACC ATGGACCCAG CCAAGCGGAT GCTGCTGAAA
GTCGAGATCG ACGACGTCGA TTTCGAAGGC ACCCGTGATG CCGTGGATGC ATTGATGGGG
ACTAAGCCGG AAGCCCGATT CCGGTTTATT CAGGAGCGGG CCGCCTTTGC GGAAAACTTG
GATATTTGA
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| Protein sequence | MDDNNDLFAA LPSTPAEAAK TQKGAADVTA AGTAPVTAAQ PETPAKAVAF GSATPASTGN
PDDYGASSIR VLEGLEPVRM RPGMYIGGTD EKALHHLFAE VIDNSMDEAV AGHANFIDVH
LDAEGFLTVS DNGRGIPVEL HPQVPGKSTL EVIMTKLHAG GKFDGKAYET SGGLHGVGVS
VVNALSDLLE VEVARNRKLY RQRFSRGVPL GGLEELGDVH NRRGTRVRFH PDPQIFGDHA
KFDPGRIFRM ARSKAYLFGG VEIRWSCDPA ILTTGGDIPD KAVFHFPGGL KDYLAATLGK
EFTVTREIFA GKTEKTGGHG AMEWAITWYG GDPQVHSYCN TIPTPEGGTH EAGLRIALTK
GLKNYAELTQ NKRAQQISTD DVMISAVGML SVFIREPEFV GQTKDKLATV EAQRLVENAL
RDPFDHYLAD NPNEAAKLLD WVIERAEERL RRRKEKEVNR KTAVRKLRLP GKLADCAQNT
AEGAELFIVE GDSAGGSAKQ ARNRSNQAIL PLRGKILNVG SASREKLMAN QQIADLIQAL
GCGTRTKYRD EDLRYERIVI MTDADVDGAH IASLLITFFY QEMPELIRGN HLYLAVPPLY
VIRQGAKTVY ARDDAHRAEL METTFKGKKV EIGRFKGLGE MMPAQLKETT MDPAKRMLLK
VEIDDVDFEG TRDAVDALMG TKPEARFRFI QERAAFAENL DI
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