| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2194 |
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| Symbol | dacF |
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| ID | 7387903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1802853 |
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| End bp | 1804307 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651384 |
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| Product | D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein |
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| Protein accession | YP_002549578 |
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| Protein GI | 222148621 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0757484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAGTTG CTAGCCTCCT TGGTCGAAAC ATGATTGTTC GGCCTGTCAT GCGTGTCTCT
CTCACCGTGG CTCTGGTCTG CGCCACGTTG GTGGCTCCGG CTCCCGAGGC TGCTGCCGCA
TCGCGCTATG CCGACATCGT TGTGGATGTG AATAATGGCA AGGTTTTGCG CGCCACCGAT
GCCGACAGCC TGCGTTATCC CGCATCGCTC ACTAAGATGA TGACCCTGTA TCTGGTTTTC
GAAGCGCTGG AGAAAGGCCG GATCCGGTTG AATTCTTCTG TTCCCGTGTC GGCCCATGCT
GCCTCCGAGC CACCATCCAA GCTTGGCCTC AGGCCCGGCG GCAGCTTTAC CGTTGAGCAA
GGCATTCAGG CCCTCGTCAC CCGCTCCGCC AATGACGCGG CCACTGCGTT CGGCGAATAT
CTCGGCGGCT CCGAGGCCCG GTTTGCCCAG ATGATGACAT CCAAGGCACG CGCACTTGGC
ATGTCGCGGA CCACCTATCG CAATGCGAAT GGCCTGCCAA ACTCCGGCCA GATGACCACG
GCCCGCGATC AGGCGCGGCT GGGCATGGCG CTAAGACAGC ATTTTCCGCA ATATTACGCT
TACTTTTCCA CCCGCAGCTT CACCTATGGT CGCCAGGTAA TCGGCAATCA CAATCGCCTC
ATCGGCTCGG TGCGCGGCGT CGACGGGATC AAGACCGGCT TTACCAATGC CTCCGGCTTC
AACCTTGTGA CCTCGCTGCA GATCGATGGT AAATCAGTGG TTGGCGTGGT GCTGGGCGGT
GCCTCAGGTG CCGCGCGCGA CAACCAGATG CGGAAGCTGA TGGCAACCTA TGTACCGGAA
GCCTCCCGTC GTGGTGGCGC AAGTCCGCTT ATTGCCCGCC AAAGCACCGT GCCGGAGCCG
ATGGCGCCTG TTGCCCGCGA AACCGCCGTT GCACCCCAAT TGCCTCAATC CGGTGTGCCC
GTACCCGGCG GACGCTATGA CACAGGTAGC CTAAGCGAAA CAGCTTATGC CGGTGGAGGA
GGCGCCAATG ATGCGGTTGC CGCCCTTGCG AAGCAAGCGG AGGCAAGCCA GGCCCTGGAA
ACAGAATCGG CTCCCATGCC GCAGACCCGC AAAAGTGCGT CGCGCCACTC CAAGTCATCT
GGCCCCAAAC CGCCAGCCGA TGTCGACAAC ACAGTCACGT TCTCCACCAA GGCCCCAACT
GCGGCACCTT CGGGCTGGAC CGTCCAGATC GGTGTTTCGG ATAGCCAGGA AGCGGCGATG
GACCTGCTGA AAAGCGCCCG TGCCAAGAGC GGTATTTCCC TCAAGGGTGC GCGGCCTTTC
GCCATGGCCT ATGGCGAAGG AGCATCTCAG GTCTATCGCG CCCGGTTTGT CGGCTTCGAT
GATCAGAAGT CTGCGGTCAA TGCCTGCAAT CGCTTGAAAA AGGCAGGCGT CAGCTGCTGG
GCCGCAATGC AGTAA
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| Protein sequence | MRVASLLGRN MIVRPVMRVS LTVALVCATL VAPAPEAAAA SRYADIVVDV NNGKVLRATD
ADSLRYPASL TKMMTLYLVF EALEKGRIRL NSSVPVSAHA ASEPPSKLGL RPGGSFTVEQ
GIQALVTRSA NDAATAFGEY LGGSEARFAQ MMTSKARALG MSRTTYRNAN GLPNSGQMTT
ARDQARLGMA LRQHFPQYYA YFSTRSFTYG RQVIGNHNRL IGSVRGVDGI KTGFTNASGF
NLVTSLQIDG KSVVGVVLGG ASGAARDNQM RKLMATYVPE ASRRGGASPL IARQSTVPEP
MAPVARETAV APQLPQSGVP VPGGRYDTGS LSETAYAGGG GANDAVAALA KQAEASQALE
TESAPMPQTR KSASRHSKSS GPKPPADVDN TVTFSTKAPT AAPSGWTVQI GVSDSQEAAM
DLLKSARAKS GISLKGARPF AMAYGEGASQ VYRARFVGFD DQKSAVNACN RLKKAGVSCW
AAMQ
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