Gene Avi_2171 details

Gene Information

• Locus tag: Avi_2171
• Symbol: glmS
• ID: 7387886
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1785821
• End bp: 1787647
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643651367
• Product: glucosamine--fructose-6-phosphate aminotransferase
• Protein accession: YP_002549561
• Protein GI: 222148604
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0449] Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
• TIGRFAM ID: [TIGR01135] glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0535933
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGCGGTA TTGTCGGAAT TGTCGGTGAT CGGCCGGTTT CGGAACGCTT GGTGGATGCC 
CTGAAGCGGC TGGAATATCG GGGGTATGAT TCGGCAGGCG TTGCGACGCT CGATCATGGT 
GTGATGAATC GCCGCCGCGC CGAGGGAAAG CTGTTCAATC TGGAAACCAA GCTTGCGCAA 
CAGCCGCTTC CAGGCTTGAT CGGCATTGCT CATACTCGCT GGGCCACGCA CGGCGCGCCG 
AATGAAGCCA ATGCCCATCC GCATTTCGTC GAAGGCGTAG CGGTCGTTCA CAACGGAATT 
ATCGAGAATT TCTCCGAGCT GCGCGACGAG CTTGTCGCTG ACGGCGCTAC GTTCACCAGC 
CAGACCGACA CAGAAGTCGT CGCCCAGCTT CTTGCCCGCT TCCGCCGTCA GGGGCTGGAT 
CATAAGGCTG CGATGCTGGC GATGCTGAAC CGGATTACCG GCGCCTATGC ACTGGTGGTG 
ATGTTTGCAG ATGACCCGAT CCAGCTTTTT GCCGCCCGGT TCGGGCCGCC GCTGGCCATC 
GGCCATGGCA AGGGTGAAAT GTTCCTGGGC TCCGACGCCA TTGCCCTGTC GCCTTTCACC 
AACCAGATTA CCTATCTGGT CGATGGGGAT TTCGCTGTGA TTGGCCATCG CAGTGCCCAG 
ATCATGGATT TCGCGGGCAA GCCGGTCAAG CGCATCAAGC AGGTCTCGCA GGGCAGCGCC 
TATCTGGTCG ATAAGGGCAA TCATCGCCAT TTCATGGAGA AAGAAATCTA TGAACAGCCG 
GAGGTGATCT CCCATGCGCT GGCGCATTAT GTCGATCTGG CTGCCCATAC GGTGAAGAGC 
GATGTGATCG GCCTGGATTT TGCCCGCCTG CGTGGTCTGG CGATTTCGGC CTGCGGGACG 
GCCTATCTGG CAGGCCTGAT CGGTAAATAC TGGTTTGAGC GCTATGCCCG CCTGCCAGTC 
GAAATCGATG TCGCATCCGA ATTTCGCTAC CGGGAAATGC CGCTGTTGCC GGATCAGGCC 
GCACTGTTCA TTTCGCAATC GGGCGAAACC GCCGATACGC TGGCCTCGCT GCGCTATTGC 
AAGGAGGCGG GGCTGAAAAT CGGTGCGGTC GTCAATGTGC AGGAATCGAC CATTGCCCGC 
GAGGCCGATG CGGTCTTTCC AATTTTGGCC GGGCCGGAGA TCGGCGTTGC CTCCACCAAG 
GCTTTCACCT GCCAGCTCGC CGTCATGGCG TCGCTGGCGA TTGCCGCCGG GAAGGCGCGG 
GGCCTGATCG GTGAACAGGA CGAAAAGGAG ATGGTGCGGC ATCTGTCCGA ACTGCCGCGC 
ATCATGAGCC GGGTGGTCAA CCTGATCCAG CCGCAGATGG AAAGCCTGTC GCGGGACCTG 
TCGAAATTCA AGGACGTGCT CTATCTCGGT CGCGGCACCA GCTATCCGCT GGCATTGGAA 
GGGGCGCTGA AGCTCAAGGA GATTTCCTAT ATTCATGCTG AGGGCTATGC CGCAGGCGAG 
CTGAAGCATG GCCCGATTGC GCTGATCGAT GAAAACATGC CTGTTATCGT CATCGCTCCG 
CATGACCGGT TCTTCGAAAA GACCGTCTCG AACATGCAGG AAGTGGCGGC GCGCGGCGGC 
AGGATCATTT TCATCACCGA TGAGAAGGGC GCGGCATCCT CCAGGCTGGA AACCATGGCG 
ACTATCGTTC TGCCCGATGT GGCGGAAATC ATCGCGCCCA TGGTGTTTTC ACTGCCGATC 
CAATTGCTCG CCTATCATAC GGCGGTGTTC ATGGGCACGG ATGTCGATCA GCCGCGCAAT 
CTGGCGAAAT CCGTCACGGT TGAGTGA 

 

Protein sequence

MCGIVGIVGD RPVSERLVDA LKRLEYRGYD SAGVATLDHG VMNRRRAEGK LFNLETKLAQ 
QPLPGLIGIA HTRWATHGAP NEANAHPHFV EGVAVVHNGI IENFSELRDE LVADGATFTS 
QTDTEVVAQL LARFRRQGLD HKAAMLAMLN RITGAYALVV MFADDPIQLF AARFGPPLAI 
GHGKGEMFLG SDAIALSPFT NQITYLVDGD FAVIGHRSAQ IMDFAGKPVK RIKQVSQGSA 
YLVDKGNHRH FMEKEIYEQP EVISHALAHY VDLAAHTVKS DVIGLDFARL RGLAISACGT 
AYLAGLIGKY WFERYARLPV EIDVASEFRY REMPLLPDQA ALFISQSGET ADTLASLRYC 
KEAGLKIGAV VNVQESTIAR EADAVFPILA GPEIGVASTK AFTCQLAVMA SLAIAAGKAR 
GLIGEQDEKE MVRHLSELPR IMSRVVNLIQ PQMESLSRDL SKFKDVLYLG RGTSYPLALE 
GALKLKEISY IHAEGYAAGE LKHGPIALID ENMPVIVIAP HDRFFEKTVS NMQEVAARGG 
RIIFITDEKG AASSRLETMA TIVLPDVAEI IAPMVFSLPI QLLAYHTAVF MGTDVDQPRN 
LAKSVTVE