| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2169 |
|---|
| Symbol | |
|---|
| ID | 7387884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1783104 |
|---|
| End bp | 1784177 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651365 |
|---|
| Product | lipoprotein |
|---|
| Protein accession | YP_002549559 |
|---|
| Protein GI | 222148602 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0737964 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TCGCACTCGT ATTTGCGGCT TCCGTCGCCA CGATGCTTTC CGTTGCCGGT
AGCGCCAGCG CCGCCGACAA GACCAAGATC TGCTTCGTTT ACGTCGGCAG CAAGACGGAT
GGCGGTTGGA CCCAGGCTCA TGAGCTGGGC CGCCAGGAAT TGCAGAAGCA TTTCGGCGAC
AAGATCGACA CGCCGCTCCT GGAAAACGTG CCGGAAGGCC CGGATGCTGA ACGCGCTATC
GAGCGTCTGG CCCGCGAAGA CTGCAAGCTG ATCTTCACCA CCTCCTTCGG TTTCATGGAT
GCCACCGTCA AGGTCGCCAA GAAATTCCCG AAAGTGAAAT TCGAGCATGC GACCGGCTTC
AAATCGGCTG AAAATGTTGC GACCTACAAT TCGCGCTTTT ACGAAGGCCG TTACATTTCC
GGCGTGATTG CTGGCAAGCT GTCGAAGAAG GGTGAGGCCG GTTACATCGC CTCCTTCCCG
ATTCCCGAAG TGGTGATGGG CATCAATGCG TTCGAGCTTG GCGCGAAATC CGTCAATCCG
AATTTCAAGA TGAAGGTCAT CTGGGTCAAT ACCTGGTTCG ACCCCGGCAA GGAAGCCGAT
GCCGCCAAGG CGCTGCTGGA CCAGGGCGTC GATATCCTGA CCCAGCACAC CGACACCACG
GCTCCAATGC AGATCGCGCA GGAGCGCGGC ATCAAGGCGT TCGGCCAGGC CTCCGACATG
ATCGCTGCCG GCCCAACCTC GCAGCTAACA GCCATCAAGG ACACCTGGGG CGCTTATTAC
ATCAAGCGCA CGCAAGCCCT GCTGGACGGC AAATGGACCT CGGAACAGAG CTTCGACGGC
CTGAAGGACG GCATCCTGAC CATGGCTCCC TACACCAACA TGCCTGACGA TGTGAAAAAG
CTGGCCGAAG ACACCGAAGC CAAGATCAAG TCCGGCGAAT TGCACCCCTT CACCGGTCCT
GTGAACAAGC AGGACGGCAC GGCTTGGCTG AAGGCTGGCG AAAAGGCTGA TGACAAGACC
CTGCTCGGCA TGAACTTCTA CGTCGAAGGC GTGGACGACA AGCTGCCGAA GTGA
|
|---|
| Protein sequence | MKKLALVFAA SVATMLSVAG SASAADKTKI CFVYVGSKTD GGWTQAHELG RQELQKHFGD
KIDTPLLENV PEGPDAERAI ERLAREDCKL IFTTSFGFMD ATVKVAKKFP KVKFEHATGF
KSAENVATYN SRFYEGRYIS GVIAGKLSKK GEAGYIASFP IPEVVMGINA FELGAKSVNP
NFKMKVIWVN TWFDPGKEAD AAKALLDQGV DILTQHTDTT APMQIAQERG IKAFGQASDM
IAAGPTSQLT AIKDTWGAYY IKRTQALLDG KWTSEQSFDG LKDGILTMAP YTNMPDDVKK
LAEDTEAKIK SGELHPFTGP VNKQDGTAWL KAGEKADDKT LLGMNFYVEG VDDKLPK
|
|---|
| |