| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2163 |
|---|
| Symbol | ubiH |
|---|
| ID | 7387879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1777150 |
|---|
| End bp | 1778358 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643651360 |
|---|
| Product | 2-octaprenyl-6-methoxyphenyl hydroxylase |
|---|
| Protein accession | YP_002549554 |
|---|
| Protein GI | 222148597 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.260088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGG TCGATGTCAC GGTAATTGGC GCAGGTCTGG CTGGGTCCGT CGCGGCACTG
GCACTGGCCC GACGCGGGCG CAAGGTAACG TTGGTTGCCG GGGATACCCG CCCGAAAGAT
CGCCGCACCG CGGCTCTGAT GGATCAATCC ATCCGCTTTC TTGACCGTCT CGGCCTATGG
GAAGAGCTCA AATCCCAAGG CGAAGCGCTT TCGACCATGC AGATCATCGA TGGCACAAAG
CGACTGCTGC GCGCGCCGCC CGTCGCGTTT CGCAGTTCTG AAATCGGGCT GGCCGCCTTC
GGCTATAATT TTCAAAACAG CGATCTTCTC GATGTGTTCG ATGCTGCCCT GGCACGCGAA
TCCAACCTTA CCGTTTTGCA TCAACAGGCT GCGTCCATTG ATTTCTCCCA GGACAATGCT
CGCGTAACAC TTGCCGATAA CACGGTTATC GAATGCGATC TGGTGGTCGG GGCCGATGGC
CGGCACTCTA TGACACGCGG CGCGGCCAAT GTGGCGGTGC GGACCTGGTC CTATCCGCAA
ACGGCTGTGG TGCTGAATTT CACCCACACC CTGCCCCACA ATAATGTCTC GACCGAATTT
CATACGGAAA CCGGGCCGTT CACCCAGGTG CCGCTCAAAG GCAATCATTC CAGCCTGGTC
TGGGTGGTCG AGCCTGAGGA AGCGGAACGG CTGACGTCCC TGCCGCTCGA CGATCTCAGC
GCTCTGGTCG AAGCGCGCAT GCAGTCTCTG CTGGGCCAAG TCACAGTCGA GGCACCGGCC
CAGGCCTGGC CGCTTTCAGG CATGAGCGCC AACCGCTACG GCAAGGGCCG GGCTGTCTTC
ATAGGCGAGG CAGCGCACGC TTTCCCGCCC ATCGGCGCGC AAGGCCTCAA TCTCAGCCTG
CGCGACATCA TGGCGCTGGA GGATTTGGTC GGGCATGAGC CGCAAAAACC GCTCGGCTCG
ACGCTGGGCG ACCGTTTCGA TCGCCACCGC AAGGTGGATG TCTGGAGCCG CACCGCCAGC
GTCGATCTTT TAAACCGCTC GCTGCTGTCG TCCTTCCTGC CGGTGCAAAT GGTGCGCGCC
GCAGGAATTC ATCTTCTCTC AAACCTGTCG CCTCTGCGCC ATTTTGCCAT GCGCGAAGGC
GTCGCACCGG GCTGTGGCTT CGGCGCGTTT CCGCAGATGA TCCGCGACAA GATCAAATCG
CGATTCTGA
|
|---|
| Protein sequence | METVDVTVIG AGLAGSVAAL ALARRGRKVT LVAGDTRPKD RRTAALMDQS IRFLDRLGLW
EELKSQGEAL STMQIIDGTK RLLRAPPVAF RSSEIGLAAF GYNFQNSDLL DVFDAALARE
SNLTVLHQQA ASIDFSQDNA RVTLADNTVI ECDLVVGADG RHSMTRGAAN VAVRTWSYPQ
TAVVLNFTHT LPHNNVSTEF HTETGPFTQV PLKGNHSSLV WVVEPEEAER LTSLPLDDLS
ALVEARMQSL LGQVTVEAPA QAWPLSGMSA NRYGKGRAVF IGEAAHAFPP IGAQGLNLSL
RDIMALEDLV GHEPQKPLGS TLGDRFDRHR KVDVWSRTAS VDLLNRSLLS SFLPVQMVRA
AGIHLLSNLS PLRHFAMREG VAPGCGFGAF PQMIRDKIKS RF
|
|---|
| |