| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2154 |
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| Symbol | dacF |
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| ID | 7387870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1766928 |
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| End bp | 1768163 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651350 |
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| Product | D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein |
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| Protein accession | YP_002549545 |
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| Protein GI | 222148588 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.497873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATATCG GCTTGCCGGT CACAAAGCGC TTTTGGGCGT ATGCTGGATC ATACGATAGA
AAGATTGTTG TGCTGCTTGC AGCACTTTTC TACGGAGCAA GCCTCCAGAC CAGCGCCTTT
GCACAAGCAG CGGCGACCGA CGCGGCAACG CCCGCCGTTT ACGCCACCGA GGCCAAGCAG
GTCCTGCTGA TCGAGGCTGA AACCGGCAGC GTGCTGTTTG AAAAGAACAG CGATCAACCG
TTCACCTCTG CGTCCCTGTC CAAGATGATG GTCGCGGAAG TGGTGCTCGA TGCGCTGAAA
TCCGGTCGCC TGACGCTGTC CCAGGACTTT CCCGTTTCCG AATTCGCCTG GCGCACCGGT
GGCGCGCCGT CGCGCACGGC GACGATGTTT GCTGCCGTGC GCTCGCGCGT GCCGGTGGAG
GCGCTGCTGA AGGGCGTCAT GGTGCAGATG GCCAATGATG CATGTCTTAT CCTTGCCGAG
GGCATGGCTG GATCGGAGCA GGGTTTCGTC AAGCTTATGA ATGAGCGGGC AGCAGCGCTT
GGCCTGAAGG ACAGCCATTT CGCTAATGCC ACCGGTCTTC CCGATCCCGG CAATAAAGTA
AGCTTGCGCG ACATGATCAC GCTGGCGCAG GCGCTGAAAT CCAATTACCC GGATTTCTAT
GCGCTTTACG CCCAGCCGGA TTTCGAATGG AACAAGATCT TCCAGCGCAA TCGCAATCGG
CTTCTTGGCC AATCGCCCGG CGTGGATGGC CTGGCGGCAG GGTTTGCCGA CGGGGAAGGT
TATTCCATCG TCGCCTCCGC GCAGCAGAAT GGCGTGCGGC TCTATCTGGG CCTGGCGGGC
AGCGAAAGCG ACAAATCCCG GCAGGAGGAT GCGGCAAAGG CACTGGCCTG GGGCTTTTCC
GCCTTTGAAA AACGCCGCCT GTTCGAAGCG GGACAAGTGA TCGGTGAGGC CAGCGTTTAT
GGCGGGGAAC CGGCACAGGT GCCGCTGGTG TCGCCGCAGC CGGTTGATGT CTATCTGCCG
GTTGGCGCCA GCGATAAGTT GGAAGCCAAG GTGATCTATC CCTGGCCGCT GCGCCCCGGC
GTGGCGCAGG GCCAGCAGGT CGGGCATTTG AAGGTCATGC TCGGCGACAA GCTGCTGCGT
GACATGCCGC TTCAGGCCGG ATCGCCGTCA ACGCTGGGCT CGCTGGTCAA ACGCACCCGT
GACGCACTGG TGGAACTGCT GTTTTCCTGG GTTTGA
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| Protein sequence | MHIGLPVTKR FWAYAGSYDR KIVVLLAALF YGASLQTSAF AQAAATDAAT PAVYATEAKQ
VLLIEAETGS VLFEKNSDQP FTSASLSKMM VAEVVLDALK SGRLTLSQDF PVSEFAWRTG
GAPSRTATMF AAVRSRVPVE ALLKGVMVQM ANDACLILAE GMAGSEQGFV KLMNERAAAL
GLKDSHFANA TGLPDPGNKV SLRDMITLAQ ALKSNYPDFY ALYAQPDFEW NKIFQRNRNR
LLGQSPGVDG LAAGFADGEG YSIVASAQQN GVRLYLGLAG SESDKSRQED AAKALAWGFS
AFEKRRLFEA GQVIGEASVY GGEPAQVPLV SPQPVDVYLP VGASDKLEAK VIYPWPLRPG
VAQGQQVGHL KVMLGDKLLR DMPLQAGSPS TLGSLVKRTR DALVELLFSW V
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