Gene Avi_2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2139 
Symbolhfq 
ID7387858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1754575 
End bp1754904 
Gene Length330 bp 
Protein Length109 aa 
Translation table11 
GC content52% 
IMG OID643651338 
ProductRNA chaperone Hfq 
Protein accessionYP_002549533 
Protein GI222148576 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.154446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGGCA TTTGGGGAAG CCTGTCCAAA AAAATTAGAA AATTGCAACC GGCACCCCCG 
ACCGGCAAGA TAGAAAGAAG CGGCGCCATG GCGGAACGTT CTCAGAATTT GCAGGACCTA
TTTCTCAATA CGGTTCGCAA GCAGAAGATT TCCCTCACTA TTTTTCTGAT CAACGGCGTG
AAGCTGACCG GCGTCGTCAC CTCGTTCGAT AATTTCTGCG TGCTGTTGCG TCGTGATGGG
CATTCCCAGC TCGTCTACAA GCACGCCATT TCGACCATCA TGCCGGGCCA GCCCATGCAG
ATGTTCGAAA GCGAAGAAGC CGCATCATAA
 
Protein sequence
MMGIWGSLSK KIRKLQPAPP TGKIERSGAM AERSQNLQDL FLNTVRKQKI SLTIFLINGV 
KLTGVVTSFD NFCVLLRRDG HSQLVYKHAI STIMPGQPMQ MFESEEAAS