Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2139 |
Symbol | hfq |
ID | 7387858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1754575 |
End bp | 1754904 |
Gene Length | 330 bp |
Protein Length | 109 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643651338 |
Product | RNA chaperone Hfq |
Protein accession | YP_002549533 |
Protein GI | 222148576 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.154446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGGGCA TTTGGGGAAG CCTGTCCAAA AAAATTAGAA AATTGCAACC GGCACCCCCG ACCGGCAAGA TAGAAAGAAG CGGCGCCATG GCGGAACGTT CTCAGAATTT GCAGGACCTA TTTCTCAATA CGGTTCGCAA GCAGAAGATT TCCCTCACTA TTTTTCTGAT CAACGGCGTG AAGCTGACCG GCGTCGTCAC CTCGTTCGAT AATTTCTGCG TGCTGTTGCG TCGTGATGGG CATTCCCAGC TCGTCTACAA GCACGCCATT TCGACCATCA TGCCGGGCCA GCCCATGCAG ATGTTCGAAA GCGAAGAAGC CGCATCATAA
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Protein sequence | MMGIWGSLSK KIRKLQPAPP TGKIERSGAM AERSQNLQDL FLNTVRKQKI SLTIFLINGV KLTGVVTSFD NFCVLLRRDG HSQLVYKHAI STIMPGQPMQ MFESEEAAS
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