| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2136 |
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| Symbol | ntrY |
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| ID | 7387856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1750835 |
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| End bp | 1753114 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651336 |
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| Product | two component sensor kinase |
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| Protein accession | YP_002549531 |
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| Protein GI | 222148574 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.132627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGC GGCGGCCTGC GGGGCAGACC GAAGAGGAAG CAGCACTGAC ACTGCTGCAG
GAACGCAAGT CCTCCTTTGC CTTGCCAGGC CTGATTCTGG CTGGGGGGGC GCTGGCCTGT
GCCATGTTCA CCCTGCCGGT CCTGCTTGGC CTCACCCCGA TTGCGCCGAC CTCGAATGTG
CTGATCGGCT CGGTGGTCAT CAATACGCTT TTCGTGCTTG GCCTGCTGTT TCTGATCGGT
CGGGAAGTCA GCCGTCTTGT CAAGGCGCGG CGCCGGGGGC GGGCGGCGGC CAGGCTGCAT
GTGCGCATCG TCGTACTATT TTCGATCGTG GCGATCACGC CGGCGATCCT GGTGGCGATT
TTCGCCAGTA TTACCCTCAA TGTCGGCCTG GATCGATGGT TTTCGATTCG TACTCAAGGC
ATCATCAATT CATCGATGAA TGTGGCCCAG GCCTATATGC TGGAAAATGC CAGTTATTTG
CAGGGCCAGA CGATTTCCAT GGCGACGGAT CTGGAGCGAA ACCGCCCGTT GTTCTTCCTC
GACCGCACCG GTTTTATCGA GTTGATGACC CGTCAGGCCA AGGGACGCGG ACTGTTGGGT
GCCTTTCTGG TTCGCAAGGA CGGCACGCCC ATCCTTCAGG CGGATATTTC GACTGAAAAG
CCGCTGCCTG CCATTCCGCA GGATGCGTTG GACAAGGCCG CTGCGGGACA GCCGACGCTG
ATCCCACCGG GTGTCACCAA TCTGGTCGGC GGGATCATCA AGATGGATTC GCTGAGCGGC
GCCTATCTCT ACACCATCCG GGCCGTTGAT CCAAAGGTCA TGCGGGCAAT GCGTGAGATG
GAGGATAATA CCGCTGAATA TAAATCGATG GAGGCGGGGC GCACCACACT GCAAATCGCC
TTTGCCGTTC TCTATCTCGG CTTTGCGCTG ATCGTGCTTC TGGCTGCCAT CTGGACCGCG
ATTGCTGTTG CCGACCGCAT CGTTCGGCCG ATCCGGCTGC TGATCGGCGC TGCCGACAAT
GTCGCGTCAG GCAATATGAA TGTTGTGGTG CCTGTCAGGG TTGCCGATGG CGATGTCGGC
AGCCTGTCGC GCACCTTCAA CAAGATGATT TCCCAGATCC GCACCCAGCG TGATGAGATT
CTGGAGGCCA AGGACGAGGT CGATGACCGC CGCCGCTTCA TTGAAGCGGT GCTGTCGGGC
GTGACGGCGG CGGTGATCGG CGTCGAGGAT GATGGCCGGA TCACCATCGT CAATCCTTCG
GCGGAACTGT TTCTGGCGCG TGGTGCCGAT CAATTGCTGG GCGAGAAGCT GGAAACGGTT
GCTCCAGAGA TCAACACGGT GTTTGCCGAA GCCGGGCTTC GCCATCGCGG TGATTTCCGC
AAGCAGATCA ATCTGGTGCG CAGCGGCAAG GAGCGGACCT TGTCAGTGCA GGTGACACGT
GAGGAAACCC GTAACGCCAC CGAATCCTAC GTGATCACGC TGGATGACAT CACGGATCTG
GTGATTGCCC AGCGCTCCAC CGCCTGGGCC GATGTGGCGC GACGGATCGC CCACGAGATC
AAGAACCCGC TCACCCCAAT TCAGCTCTCG GCAGAACGAT TGAAGCGCCG CTTCGGCAAG
CAGATCGCCA GCGAGGATCG GCAGGTTTTC GATCAGTGTA CAGATACGAT CGTGCGTCAG
GTCGAGGATA TCGGCCGGAT GGTGGATGAG TTCTCGTCCT TTGCCCGGAT GCCGAAGCCG
ACCAAGCAGC CGGCTGACCT GCGCGACGTC TTGAAGGACG CGATCTTCCT GCGGGAAATG
GGCCATAGCG AGTGTGAGTT CATTCGCGAC GTTGGCGAGC TTCCGCTCGA GGGGTCTTTC
GATGCCCGCA TGCTGGCCCA GGCGTTCGGC AATCTGATCA AGAATGCGGT GGAAGCAATC
GAGGCTGTTC CCTCCGATGC TGAAAAACTG CCGGGCCGAG TATGGATCAG GGCGGCAACA
GACGAAGGGC GTGACGGTTT CGTGGTGGAT ATCATCGATA ACGGCAAGGG ACTGCCGGTC
GATAATCGCC ATCGCATTCT GGAGCCCTAT ATGACGATGC GGGAGAAGGG CACGGGCCTT
GGCCTCGCCA TCGTCAAGAA AATCATTGAA GAGCATGGCG GTCAGCTTGA ATTGCATGAT
GCGCCGGCAG AATTCGACGG TGGGCGTGGC GCGATGATCC GCGTTGTGCT GCCGCGACAA
GCCGGGGCAG CCTCTGCCGC CACTGAAGAA CATGATAAGG AAGCAGCTTA TGGCCTCTGA
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| Protein sequence | MKTRRPAGQT EEEAALTLLQ ERKSSFALPG LILAGGALAC AMFTLPVLLG LTPIAPTSNV
LIGSVVINTL FVLGLLFLIG REVSRLVKAR RRGRAAARLH VRIVVLFSIV AITPAILVAI
FASITLNVGL DRWFSIRTQG IINSSMNVAQ AYMLENASYL QGQTISMATD LERNRPLFFL
DRTGFIELMT RQAKGRGLLG AFLVRKDGTP ILQADISTEK PLPAIPQDAL DKAAAGQPTL
IPPGVTNLVG GIIKMDSLSG AYLYTIRAVD PKVMRAMREM EDNTAEYKSM EAGRTTLQIA
FAVLYLGFAL IVLLAAIWTA IAVADRIVRP IRLLIGAADN VASGNMNVVV PVRVADGDVG
SLSRTFNKMI SQIRTQRDEI LEAKDEVDDR RRFIEAVLSG VTAAVIGVED DGRITIVNPS
AELFLARGAD QLLGEKLETV APEINTVFAE AGLRHRGDFR KQINLVRSGK ERTLSVQVTR
EETRNATESY VITLDDITDL VIAQRSTAWA DVARRIAHEI KNPLTPIQLS AERLKRRFGK
QIASEDRQVF DQCTDTIVRQ VEDIGRMVDE FSSFARMPKP TKQPADLRDV LKDAIFLREM
GHSECEFIRD VGELPLEGSF DARMLAQAFG NLIKNAVEAI EAVPSDAEKL PGRVWIRAAT
DEGRDGFVVD IIDNGKGLPV DNRHRILEPY MTMREKGTGL GLAIVKKIIE EHGGQLELHD
APAEFDGGRG AMIRVVLPRQ AGAASAATEE HDKEAAYGL
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