| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2135 |
|---|
| Symbol | ntrC |
|---|
| ID | 7387855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1749177 |
|---|
| End bp | 1750628 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643651335 |
|---|
| Product | nitrogen regulation protein NR(I) |
|---|
| Protein accession | YP_002549530 |
|---|
| Protein GI | 222148573 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.13203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCA CTATTCTTGT TGCCGATGAC GATGCTGCGA TCCGCACCGT TTTGAACCAG
GCGCTGAGCC GTGCTGGTTA CGATGTGCGC ATCACGTCGA ATGCCGCAAC CCTGTGGCGC
TGGATTTCAG CCGGTGAGGG CGATCTTGTC GTCACCGACG TGGTCATGCC GGACGAAAAC
GCCTTCGATC TCCTGCCACG CATCAAGAAG GCCCGGCCCG ACCTGCCCGT TTTGGTGATG
AGTGCCCAGA ACACCTTTAT GACGGCCATC CGCGCTTCGG AAAAGGGTGC CTATGACTAC
CTGCCCAAAC CCTTCGACCT GACCGAACTG ATCGCCATTA TCGGCAGGGC GCTGGCCGAG
CCGAAGAAAA AGCCGGCGCG GCTGGGCGAT GACATGCAGG ACGGCATGCC GCTGGTTGGC
CGTTCCGCCG CCATGCAGGA AATCTACCGG GTTCTGGCCC GGCTGATGCA GACCGATCTG
ACGCTGATGA TCACTGGCGA ATCCGGCACG GGCAAGGAAT TGGTCGCCAA GGCGCTGCAT
GATTATGGCA AGCGCCGTAA CGGTCCCTTC GTGGCGATCA ACATGGCGGC CATTCCGCGC
GACCTGATTG AATCGGAACT GTTCGGCCAC GAAAAGGGTG CGTTTACCGG CGCACAGAAC
CGCTCCACCG GACGCTTCGA GCAGGCCGAG GGCGGTACGC TGTTTCTGGA CGAGATTGGC
GATATGCCGA TGGATGCCCA GACCCGGCTC CTGCGTGTTC TACAGCAGGG TGAATACACC
ACGGTCGGCG GGCGCACGCC GATCCGCACC GATGTGCGTA TCGTTGCCGC CACCAACAAG
GACCTGAAAC AGTCGATCAA CCAGGGCCTG TTTCGCGAGG ACCTTTATTA CCGGCTGAAC
GTCGTGCCGC TGCGGCTGCC GCCGTTGCGC GACCGGGCCG AGGATATTGC CGATCTGGTG
CGCCATTTCA TCCAGCAGGG TGAGAAGGAA GGTCTGGATG CCAAGCGATT CGAGCAGGAA
GCGCTCGAAG TGATGAAATC CTATGCCTGG CCGGGCAATG TTCGTGAGTT GGAGAACCTG
GTGCGCCGGT TGATGGCGCT TTATCCACAG GATGTTATCA CCCGCGAAAT CATCGAGCAG
GAACTACGCT CAGACATTAC CGACAGCCCG CTGACCAAGG GTGGTTCGGG TGGCGGTCAC
ATGACCATTG CCCAGGCGGT CGAGGAAAAT ATGCGCAGCT ACTTCGCGTC CTTCGGCGAT
AACCTGCCGC CGCCCGGCCT TTACGACCGG GTTTTGACTG AAATGGAATA TCCGCTAATT
CTGGCGGCCC TGACGGCCAC CCGTGGAAAC CAGATCAAGG CCGCCGATCT TTTGGGTTTG
AACCGAAATA CGCTGCGCAA GAAAATCCGC GAATTGGGTG TTTCGGTTTA CCGCAGCTCG
CGTAGCGCTT GA
|
|---|
| Protein sequence | MTATILVADD DAAIRTVLNQ ALSRAGYDVR ITSNAATLWR WISAGEGDLV VTDVVMPDEN
AFDLLPRIKK ARPDLPVLVM SAQNTFMTAI RASEKGAYDY LPKPFDLTEL IAIIGRALAE
PKKKPARLGD DMQDGMPLVG RSAAMQEIYR VLARLMQTDL TLMITGESGT GKELVAKALH
DYGKRRNGPF VAINMAAIPR DLIESELFGH EKGAFTGAQN RSTGRFEQAE GGTLFLDEIG
DMPMDAQTRL LRVLQQGEYT TVGGRTPIRT DVRIVAATNK DLKQSINQGL FREDLYYRLN
VVPLRLPPLR DRAEDIADLV RHFIQQGEKE GLDAKRFEQE ALEVMKSYAW PGNVRELENL
VRRLMALYPQ DVITREIIEQ ELRSDITDSP LTKGGSGGGH MTIAQAVEEN MRSYFASFGD
NLPPPGLYDR VLTEMEYPLI LAALTATRGN QIKAADLLGL NRNTLRKKIR ELGVSVYRSS
RSA
|
|---|
| |