| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2120 |
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| Symbol | lpdA |
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| ID | 7387843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1738242 |
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| End bp | 1739687 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651323 |
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| Product | dihydrolipoamide dehydrogenase |
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| Protein accession | YP_002549518 |
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| Protein GI | 222148561 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.203101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATG CTTATGACGT CATCATCATC GGGTCCGGCC CTGGCGGCTA TGTGACTGCG
ATCCGTGCAG CCCAGCTTGG CCTGAAAATC GCCATTGTCG AGCGCGAGCA TCTTGGCGGC
ATCTGCCTCA ACTGGGGCTG TATCCCCACC AAGGCGCTGC TGCGGTCGGC GGAAATTCTC
GATCACGCCA ATCACGCCAA GAGTTATGGC CTGACGCTGA ACGGCACGAT GACCGCCGAT
GTGAAAGACG TTGTTGCCCG GTCGCGTGGT GTCTCCGCCC GCCTCAACGG CGGCGTTGCC
TTTCTGATGA AGAAGAACAA GATCGATGTG ATCTGGGGTG AAGCCAAGCT CACCAAGCCA
AACGAAATCG TCGTCGGCGC ATCGTCCAAG CCAGCCGTGC AGCCGCAAAA CCCGGTTCCC
AAAGGCGTGT TGGGTGAGGG CACCTATACC GCCAAGCATA TTATCGTCGC CACCGGAGCC
CGCCCGCGCG CGCTGCCCGG CATCGAGCCG GATGGCAAGC TGATCTGGAC CTATTTCGAA
GCGATGAAGC CGGATTTCAT GCCGAAGTCC ATCGTCGTCA TGGGCTCTGG CGCCATCGGC
ATCGAATTCG CCTCTTTCTA CCGCTCCATG GGCGTGGATG TGACGGTGGT TGAGCTGATG
GCCAATATCA TGCCGGTCGA GGACGTGGAA ATCTCCACCA TCGCCCGCAA GGCGCTGGAA
AAGCGCGGCC TGAAGATCAT CACCGAGGCC AAGGTTTCCA AGGTCGAAAA GGGCGCCAAT
TCCATCACCG CTCATGTCGA GACCAAGGAT GGCAAGGTGC AGCAGATCAC CGCTGACCGG
CTGATTTCGG CTGTCGGCGT GCAGGGCAAT ATCGAAAATC TCGGTCTGGA AGCTTTGGGC
GTCAAGACGG ATCGCGGCTG CATCGTCATT GACGGCTATG GCAAGACCAA TGTGCCGGGC
CTCTATGCCA TCGGCGATGT CGCAGGTCCG CCAATGTTGG CCCATAAGGC CGAACATGAA
GGCGTGATCT GCATCGAGAA GATTGCCGGT CTGCCGCATG TTCATCCCAT GAACAAGTCT
CTGATCCCTG GCTGCACCTA TTGCAATCCG CAGGTCGCCT CCGTCGGTCT CACCGAAGCC
AAGGCCAAGG CCGATGGCCG CGAGATCCGC GTTGGTCGCT ACAATTTCAA CGCCAATGGC
AAGGCCATCG CGCTTGGCGA AGACAATGGC ATGATCAAGA CGATCTTCGA CAAGAAGACC
GGCGAATTGG TCGGCGCGCA TATGGTTGGC GCGGAAGTGA CCGAGTTGAT CCAGGGCTTC
GTGGTCGCCA TGAACCTGGA GACGACAGAA GAAGAGCTGA TGCACACCAT CTTCCCGCAT
CCGACCCTGT CGGAAATGAT GAAGGAAAGC GTGCTTGATG CGTATGGCAA GGTGCTGAAC
GCCTGA
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| Protein sequence | MSNAYDVIII GSGPGGYVTA IRAAQLGLKI AIVEREHLGG ICLNWGCIPT KALLRSAEIL
DHANHAKSYG LTLNGTMTAD VKDVVARSRG VSARLNGGVA FLMKKNKIDV IWGEAKLTKP
NEIVVGASSK PAVQPQNPVP KGVLGEGTYT AKHIIVATGA RPRALPGIEP DGKLIWTYFE
AMKPDFMPKS IVVMGSGAIG IEFASFYRSM GVDVTVVELM ANIMPVEDVE ISTIARKALE
KRGLKIITEA KVSKVEKGAN SITAHVETKD GKVQQITADR LISAVGVQGN IENLGLEALG
VKTDRGCIVI DGYGKTNVPG LYAIGDVAGP PMLAHKAEHE GVICIEKIAG LPHVHPMNKS
LIPGCTYCNP QVASVGLTEA KAKADGREIR VGRYNFNANG KAIALGEDNG MIKTIFDKKT
GELVGAHMVG AEVTELIQGF VVAMNLETTE EELMHTIFPH PTLSEMMKES VLDAYGKVLN
A
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