| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2114 |
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| Symbol | pdhB |
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| ID | 7386910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1733960 |
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| End bp | 1735345 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651319 |
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| Product | pyruvate dehydrogenase subunit beta |
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| Protein accession | YP_002549514 |
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| Protein GI | 222148557 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.518252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAATCA ATATTCTCAT GCCCGCCCTG TCTCCGACAA TGGAGGAAGG CACGCTGTCC
AAATGGCTGA AAGCCGAAGG CGATAGCGTC AAGTCCGGCG ACGTGATCGC CGAAATCGAA
ACCGACAAGG CAACCATGGA AGTGGAAGCC GTGGATGAAG GCGTGATCGG CAAGCTGCTG
ATTGAAGCCG GAACCCAGAA TGTCAAGGTC AACACGCCGA TTGCCGTGCT GTTGCAGGAT
GGCGAAAGCG CCTCCGAGGT TTCGGCTCCC AAGGCTGAAG AAGCAGCGGC ACCAGCCGTT
CCGCAGGAAG AAAAGCCGAC CGAGACCGGT TCTGCTTCCG CGCCTGTTCC GGCTCAGCCG
ATTTCCAGCG CTGCCAGCGA TCCGTCCATT CCGGCCGGAA CGGAAATGGT ATCGATGACA
GTGCGTGAAG CGCTGCGCGA AGCCATGGCT GAAGAAATGC GCGCCAATGA CGATGTGTTC
ATCATCGGTG AGGAAGTGGC GGAATACCAG GGTGCCTACA AGATCACCCA GGGCCTGCTT
GCCGAATTCG GCGACCGTCG CGTGGTCGAT ACCCCGATCA CCGAGCATGG TTTTGCTGGT
GTGGCCGTGG GTGCCGCCAT GGCGGGTCTG CGTCCGATTG TTGAGTTCAT GACCTTCAAC
TTCGCCATGC AGGCGATTGA CCAGATCATC AACTCGGCTG CCAAGACGCT CTACATGTCC
GGCGGTCAGA TGGGCGCGCC CATCGTGTTC CGTGGCCCGA ACGGCGCTGC GGCCCGCGTT
GGTGCGCAGC ACAGCCAGGA TTATGCCGCA TGGTATAGCC AGATCCCCGG CCTGAAGGTG
ATTTCGCCTT ACACGGCAGC GGATGCCAAG GGCCTGCTGA AAGCGGCGAT CCGCGATCCG
AACCCGGTGG TCTTCCTCGA AAACGAAATC CTCTACGGTC ACAGCTTTGA TGTGCCGAAG
CTGGATGATT TCGTTCTGCC GATTGGCAAG GCGCGCATTC ATAAGTCTGG CAAGGATGTC
ACTGTCGTGT CCTGGAGCAT TGGCATGACC TATGCGACCA AGGCTGTGGA AGAGCTGACC
AAGCTTGGCA TCGATGTCGA ATTGATCGAC CTGCGCACCA TCCGTCCGAT GGATCTGCCG
ACGGTAATCG AATCGGTCAA GAAGACCGGT CGTCTGGTCG TGGTGGAAGA AGGCTATCCG
CAGTCGTCCG TGGGCGATTT CGTGGCCAAC CGCATTCAGC GCGAAGCCTT CGATTACCTC
GATGCGCCTG TTCTGACCGT GGCTGGCAAG GACGTGCCGA TGCCTTACGC GGCCAATCTC
GAAAAGCTCG CTCTGCCGAA TGTCGGCGAA GTGGTCCAGG CCGTTAAATC CGTCTGCTAC
AAATAA
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| Protein sequence | MPINILMPAL SPTMEEGTLS KWLKAEGDSV KSGDVIAEIE TDKATMEVEA VDEGVIGKLL
IEAGTQNVKV NTPIAVLLQD GESASEVSAP KAEEAAAPAV PQEEKPTETG SASAPVPAQP
ISSAASDPSI PAGTEMVSMT VREALREAMA EEMRANDDVF IIGEEVAEYQ GAYKITQGLL
AEFGDRRVVD TPITEHGFAG VAVGAAMAGL RPIVEFMTFN FAMQAIDQII NSAAKTLYMS
GGQMGAPIVF RGPNGAAARV GAQHSQDYAA WYSQIPGLKV ISPYTAADAK GLLKAAIRDP
NPVVFLENEI LYGHSFDVPK LDDFVLPIGK ARIHKSGKDV TVVSWSIGMT YATKAVEELT
KLGIDVELID LRTIRPMDLP TVIESVKKTG RLVVVEEGYP QSSVGDFVAN RIQREAFDYL
DAPVLTVAGK DVPMPYAANL EKLALPNVGE VVQAVKSVCY K
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