| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2107 |
|---|
| Symbol | kdsA |
|---|
| ID | 7386906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1729983 |
|---|
| End bp | 1730837 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651315 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_002549510 |
|---|
| Protein GI | 222148553 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTT CTGCCCTGCC GAATGCAACC GTCACCATTG GCGAAGGCGC CAAGACGGTC
TCCTTCTCCA ACAGTGCGAA AATTTCGCTG ATCTGCGGTC CCTGCCAGAT GGAAAGCCGC
GAGCACGCCT TCATGATGGC GGGCGGGATC AAGGAAATCT GCGACAAACT CGGCATTGGC
CTTGTCTATA AATCCTCCTT CGACAAGGCA AACCGCACCT CGCTGAAGGC TGGGCGCGGG
ATTGGCATCG AGCAGGGGTT GGCGATCTTT GCCGATCTGA AGAAGGAATT CGGTTTTCCT
GTCCTGACAG ACATTCACAA CGAAGACCAG TGCGCCGAAG TGGCTGAAGT GGTTGATGTG
TTGCAGATCC CGGCCTTCCT GTGCCGCCAG ACCGATCTTC TGATTGCTGC GGCGAAGACC
GGGAGGGCGA TCAATGTCAA GAAGGGTCAG TTTCTGGCGC CCTGGGACAT GAAAAATGTC
ATGGAAAAAA TTACCCTCTC GGGCAATCCC AATGTGATGC TCTGCGAGCG CGGCGCTTCC
TTCGGTTATA ACACGCTGGT CTCCGACATG CGCTCGCTGC CGATCATGGC AGGCATGGGT
GCGCCGGTGA TCTTCGATGC CACGCACTCG GTACAGCAAC CGGGCGGGCA GGGCGGCTCG
ACCGGTGGCC AGCGCGAATT CGTGGAAACG CTGGCACGCG CTGCTGTGGC GGTTGGTGTG
GCGGGCCTCT TCATCGAATC GCATCAGGAC CCAGACAATG CACCGTCCGA TGGCCCCAAT
ATGGTTTACC TGAAGGACCT TGAGCGTTTG CTGGAAAAGC TGTTGGCGTT CGACGCCGTC
ACCAAGGCGG CCTGA
|
|---|
| Protein sequence | MTASALPNAT VTIGEGAKTV SFSNSAKISL ICGPCQMESR EHAFMMAGGI KEICDKLGIG
LVYKSSFDKA NRTSLKAGRG IGIEQGLAIF ADLKKEFGFP VLTDIHNEDQ CAEVAEVVDV
LQIPAFLCRQ TDLLIAAAKT GRAINVKKGQ FLAPWDMKNV MEKITLSGNP NVMLCERGAS
FGYNTLVSDM RSLPIMAGMG APVIFDATHS VQQPGGQGGS TGGQREFVET LARAAVAVGV
AGLFIESHQD PDNAPSDGPN MVYLKDLERL LEKLLAFDAV TKAA
|
|---|
| |