| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2098 |
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| Symbol | |
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| ID | 7386899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1718632 |
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| End bp | 1720569 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643651308 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002549503 |
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| Protein GI | 222148546 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTGC ATGGCAGCGG AACAGCGGCA GTTTACAATG TGATGGCTGG GCTATCCACG
TCCATTCTGC TTCTGGCCGA GGCGAATAAC GTCAGCGTCG TTGTCGGCTG GATGACAGCG
TTGGCTGTCG CGACGTTATT TCGCTTCCTG TTGTCGCGCC ATCTGCTGCA CCGTCACTAT
GCCTCTTCCA ATCCGGATGA CGTGCTTCGG CTGATGTGCA TCACGGCCTG CCTGCAAGGG
ACCGTATGGG CTCTACTGCC GACAGCGGTG GTCGATATGG ACTTGCTGGG CCGTGATGCG
TCTATTCTGG TGGTTATCGG CGGTCTGGTG GCGACAGCCA TGTTCCGCCA GGCCGGCACC
AGTCAGGTCG CCTTCAGCTA CTGTATTCCG ATGATTTTAG CGATATTGTG GAATTTCGCG
ATTCATGGTG GCATCATTGC GACCGTCTCC ACGTTTAATT TCATCGTATT GGCCATATTC
ATGTCGCACC TGCTGTTGAA GGCGGACAGG ACATTTATGG AAAGCGAAAT GGCCAAGCTG
AGCAGCCAGG CCGCGACGCA ATCGCTGACC ATTGCCAATG AGGACATTCA CCACAAGAAT
TTGCGGCTGG AGGTTCTGGC CAACGGTGAT CCCGTGACGG GGCTGTTCAA CAGGATCTAC
TTCAATGGAC GACTCGCGGG GGAAATTGCT GCTGCCAAAG TCGGAAACCG GGAAATTGGC
CTGTTATTGG TCAATGTCGA TCGGTTCAAG CTGATCAACG ATGCTTTTGG TCATCGCGGT
GGAGACCAGT TTCTGGCGAT CCTGGGGCAG AGGTTGAAAA ATGCCGCCGG TGGTGATGCC
GTCACAGCCC GGATCAGCGG TGATGAATTT GCAATTCTGT TGCGGAACGG CGACGTGCGC
CAGGATTGCC GAGCGCTTGC TGAGACCGTT ATCGCCGCGT CCATGGTTCC TATTGCCGTC
CATGGCACTC AGGTCAGTCC TGGTTTGAGC GCCGGGATTG CGTTTTTTCC CGACCATGCG
GAAAATGGTG ACGGGCTGTT TACCTGTGCC AGCATGGCTT TATCGGATGC CAAGCAGGAC
GGTCGCGGTC AATTGCGGGA ATTCGATCAT CAGATCAAAC AGCGCATCGA TCGCCAACGG
CGTATCGAGC AGGACCTGCC AGCAGCACTT CGCGACACTG CGCTCGAGAC CTGGTTCCAG
CCACAGGTCG ATCTTGCGAC GGGCAAGATC GTCGGTTTCG AGGCGCTGGT TCGCTGGTTC
CATCCGGAGT TCGGGGCGAT TGCCCCGCCT GAAATCGTCA ATGCCGCCCA GGCCATGCAG
ATGTGTGAGG CGTTGACCGG TTTCGTGACA GAAAATATCT GCCAGCTGCT CAACAGGCTG
AAAGAGCTAG GCATGCCGGA GACGGCTGTC GCCTTGAACG TATCGCCGCG CGAATTTGCG
CTCTATGACG TATCTGTCAT GCTGGACCGG ATTACCACTG CCTATGGCGT CAGTCGCAAC
CTTCTGGAAG TGGAGATCAC CGAGGAAACC ATTCTGGATC TGGCGGTCGC GGGTGAACAA
CTGACCCGGC TTGAAAATAG CGGCTATAAA CTGACGGTAG ATGATTTCGG CATGGGATAC
TCGTCCTTGG CCTATTTGAT CAGCCTGAAG ATTACCCGGT TGAAGATCGA TCGCAGTTTC
GTCACCGGGA TCAGTAATTC TCCAAAGAAC AAGGCGCTTG TTGTCGCCCT GGTCGGTCTC
GGCCGTGCAC TGGGTGTCGA TATCGTGGCG GAGGGTGTGG AAACGGTGGC GGATGCCAGG
ACGTTGACCG AAATCGGCTG CACGATTGGC CAGGGCTATT ATTTCTCCCG GCCCATGCCC
GCCGATATGC TGCCCAAATG GCTCGACTTT AAAAAAAAGC AACTGAGTGA GAAAAAATCA
CGGCGCGCCG TGGCCTGA
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| Protein sequence | MALHGSGTAA VYNVMAGLST SILLLAEANN VSVVVGWMTA LAVATLFRFL LSRHLLHRHY
ASSNPDDVLR LMCITACLQG TVWALLPTAV VDMDLLGRDA SILVVIGGLV ATAMFRQAGT
SQVAFSYCIP MILAILWNFA IHGGIIATVS TFNFIVLAIF MSHLLLKADR TFMESEMAKL
SSQAATQSLT IANEDIHHKN LRLEVLANGD PVTGLFNRIY FNGRLAGEIA AAKVGNREIG
LLLVNVDRFK LINDAFGHRG GDQFLAILGQ RLKNAAGGDA VTARISGDEF AILLRNGDVR
QDCRALAETV IAASMVPIAV HGTQVSPGLS AGIAFFPDHA ENGDGLFTCA SMALSDAKQD
GRGQLREFDH QIKQRIDRQR RIEQDLPAAL RDTALETWFQ PQVDLATGKI VGFEALVRWF
HPEFGAIAPP EIVNAAQAMQ MCEALTGFVT ENICQLLNRL KELGMPETAV ALNVSPREFA
LYDVSVMLDR ITTAYGVSRN LLEVEITEET ILDLAVAGEQ LTRLENSGYK LTVDDFGMGY
SSLAYLISLK ITRLKIDRSF VTGISNSPKN KALVVALVGL GRALGVDIVA EGVETVADAR
TLTEIGCTIG QGYYFSRPMP ADMLPKWLDF KKKQLSEKKS RRAVA
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