| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2093 |
|---|
| Symbol | ccoO |
|---|
| ID | 7386895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1716046 |
|---|
| End bp | 1716777 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643651304 |
|---|
| Product | cytochrome c oxidase cbb3-type subunit II |
|---|
| Protein accession | YP_002549499 |
|---|
| Protein GI | 222148542 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR00781] cytochrome c oxidase, cbb3-type, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0892141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATTC TCGATAAACA CAAAATCATC GAAAAAAATG CCAGCCTGCT GCTTTTGGGT
TCGCTGCTGG TGGTTGCGAT AGGCGGTATC GTCGAAATCG CACCGCTGTT CTACCTGCAA
AACACCATCG AAAAGGTGGA GGGCATGCGG CCCTACTCGC CACTCGAGCT GGCCGGTCGC
GACATCTACA TCCGCGAAGG CTGTTACCTC TGCCACAGCC AGATGATCCG GCCGTTCCGT
GACGAAGTGG AACGTTACGG TCATTACTCC CTGGCGGCGG AATCGATGTA CGACCATCCG
TTCCAATGGG GTTCCAAGCG CACCGGGCCG GATCTGGCCC GGGTCGGGGA TCGCTACTCG
AACGATTGGC ATGTCCAGCA CCTGAGCGAT CCGCGCTCGG TGGTGCCGGA ATCGATCATG
CCGAAATACG CGTTCCTGAA AGAAACGCCG CTGAAGATCA CCAATGTCTC CATGGACCTG
AAGGTCAACA GCGAAGTCGG CGTACCCTAT ACCCAGGATA TGATCGACAA TGCCAAGGCC
GATCTGGCTG CCCAGGCGGA CCCGAATGCC GATACCACGG CGTTGCTGGC CCGCTATCCC
AAGGCGAAAA TCGGTGATTT CGACGGCAAC CCGGCGGTCC TGTCCGAAAT GGACGCGCTG
ATCGCTTATC TGCAAATGAT CGGCACTTTG GTGGACTTCA CCAAATATGA CGACGCAACC
GGCTACCGTT GA
|
|---|
| Protein sequence | MSILDKHKII EKNASLLLLG SLLVVAIGGI VEIAPLFYLQ NTIEKVEGMR PYSPLELAGR
DIYIREGCYL CHSQMIRPFR DEVERYGHYS LAAESMYDHP FQWGSKRTGP DLARVGDRYS
NDWHVQHLSD PRSVVPESIM PKYAFLKETP LKITNVSMDL KVNSEVGVPY TQDMIDNAKA
DLAAQADPNA DTTALLARYP KAKIGDFDGN PAVLSEMDAL IAYLQMIGTL VDFTKYDDAT
GYR
|
|---|
| |