Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2080 |
Symbol | gph |
ID | 7386888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1707442 |
End bp | 1708155 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643651297 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_002549492 |
Protein GI | 222148535 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.307061 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAGTC AGCCCGTGTC CCCAGCAATC AACGCCGCCC CCGCCACTAT TGTCTTCGAT CTGGATGGAA CCCTGATCGA TACGGCCGAG GACCTCGTGG CAAGCCTCAA CTATACCATC GCCGCTGCCG ATCTGGCGCC AATGGTGGCC GAGGACCTCA GCCATCTGGT CGGACACGGT GCGCGGGTGA TGATCGAGCG GGCCTTCAGC CTGCGCGGCA GGCCGATTTC CGAGGATGCG TTCCAGCCCC TGCTTGAACG GTTCATCGAC CATTACAAAG ACCATATGCC CGGCAGAAGC CAGCCCTATC CCGGCCTGCT GAACGCCCTG GAACGGCTCG ACAAGGCAGG GCACCGACTG GCGGTCTGCA CCAACAAGAT GGAGGGCCTT GCCCGGCCAT TGCTTGAGGG CTTGAGCCTG ACGGACCGGT TCGCCGCCAT TACCGGCGGT GATACATTCG AGATGCGCAA GCCCGATGCC GGTCATCTGC TCGGCACCAT CGCCAAGGCT GGCGGCGACC CGCGCCGGGC TATCATGGTC GGCGATAGCC GCAACGACAT TCTGGTGGCG CGCAATGCCG GTATCCCATC CATTGCCGTG CCTTTCGGCT ACTCGGACGT ACCGGTCGCT GACCTCGAAC CCGATGTGAT CATTACACAT TTCAATGAAT TGACCTTGGA TCTGGTCGAC AGGCTCCTCA ACGAGGCCAA CTGA
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Protein sequence | MESQPVSPAI NAAPATIVFD LDGTLIDTAE DLVASLNYTI AAADLAPMVA EDLSHLVGHG ARVMIERAFS LRGRPISEDA FQPLLERFID HYKDHMPGRS QPYPGLLNAL ERLDKAGHRL AVCTNKMEGL ARPLLEGLSL TDRFAAITGG DTFEMRKPDA GHLLGTIAKA GGDPRRAIMV GDSRNDILVA RNAGIPSIAV PFGYSDVPVA DLEPDVIITH FNELTLDLVD RLLNEAN
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